Literature DB >> 18510925

Structure of the DNA repair helicase XPD.

Huanting Liu1, Jana Rudolf, Kenneth A Johnson, Stephen A McMahon, Muse Oke, Lester Carter, Anne-Marie McRobbie, Sara E Brown, James H Naismith, Malcolm F White.   

Abstract

The XPD helicase (Rad3 in Saccharomyces cerevisiae) is a component of transcription factor IIH (TFIIH), which functions in transcription initiation and Nucleotide Excision Repair in eukaryotes, catalyzing DNA duplex opening localized to the transcription start site or site of DNA damage, respectively. XPD has a 5' to 3' polarity and the helicase activity is dependent on an iron-sulfur cluster binding domain, a feature that is conserved in related helicases such as FancJ. The xpd gene is the target of mutation in patients with xeroderma pigmentosum, trichothiodystrophy, and Cockayne's syndrome, characterized by a wide spectrum of symptoms ranging from cancer susceptibility to neurological and developmental defects. The 2.25 A crystal structure of XPD from the crenarchaeon Sulfolobus tokodaii, presented here together with detailed biochemical analyses, allows a molecular understanding of the structural basis for helicase activity and explains the phenotypes of xpd mutations in humans.

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Year:  2008        PMID: 18510925      PMCID: PMC3326533          DOI: 10.1016/j.cell.2008.04.029

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  46 in total

1.  Crystal structure of UvrB, a DNA helicase adapted for nucleotide excision repair.

Authors:  K Theis; P J Chen; M Skorvaga; B Van Houten; C Kisker
Journal:  EMBO J       Date:  1999-12-15       Impact factor: 11.598

2.  Uncoupling DNA translocation and helicase activity in PcrA: direct evidence for an active mechanism.

Authors:  P Soultanas; M S Dillingham; P Wiley; M R Webb; D B Wigley
Journal:  EMBO J       Date:  2000-07-17       Impact factor: 11.598

Review 3.  The xeroderma pigmentosum group D (XPD) gene: one gene, two functions, three diseases.

Authors:  A R Lehmann
Journal:  Genes Dev       Date:  2001-01-01       Impact factor: 11.361

4.  A temperature-sensitive disorder in basal transcription and DNA repair in humans.

Authors:  W Vermeulen; S Rademakers; N G Jaspers; E Appeldoorn; A Raams; B Klein; W J Kleijer; L K Hansen; J H Hoeijmakers
Journal:  Nat Genet       Date:  2001-03       Impact factor: 38.330

5.  Nucleotide excision repair/TFIIH helicases RAD3 and SSL2 inhibit short-sequence recombination and Ty1 retrotransposition by similar mechanisms.

Authors:  B S Lee; L Bi; D J Garfinkel; A M Bailis
Journal:  Mol Cell Biol       Date:  2000-04       Impact factor: 4.272

6.  Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7.

Authors:  Y Kawarabayasi; Y Hino; H Horikawa; K Jin-no; M Takahashi; M Sekine; S Baba; A Ankai; H Kosugi; A Hosoyama; S Fukui; Y Nagai; K Nishijima; R Otsuka; H Nakazawa; M Takamiya; Y Kato; T Yoshizawa; T Tanaka; Y Kudoh; J Yamazaki; N Kushida; A Oguchi; K Aoki; S Masuda; M Yanagii; M Nishimura; A Yamagishi; T Oshima; H Kikuchi
Journal:  DNA Res       Date:  2001-08-31       Impact factor: 4.458

7.  The cancer-free phenotype in trichothiodystrophy is unrelated to its repair defect.

Authors:  M Berneburg; P H Clingen; S A Harcourt; J E Lowe; E M Taylor; M H Green; J Krutmann; C F Arlett; A R Lehmann
Journal:  Cancer Res       Date:  2000-01-15       Impact factor: 12.701

8.  Two individuals with features of both xeroderma pigmentosum and trichothiodystrophy highlight the complexity of the clinical outcomes of mutations in the XPD gene.

Authors:  B C Broughton; M Berneburg; H Fawcett; E M Taylor; C F Arlett; T Nardo; M Stefanini; E Menefee; V H Price; S Queille; A Sarasin; E Bohnert; J Krutmann; R Davidson; K H Kraemer; A R Lehmann
Journal:  Hum Mol Genet       Date:  2001-10-15       Impact factor: 6.150

9.  Production of selenomethionine-labelled proteins using simplified culture conditions and generally applicable host/vector systems.

Authors:  S A Guerrero; H J Hecht; B Hofmann; H Biebl; M Singh
Journal:  Appl Microbiol Biotechnol       Date:  2001-09       Impact factor: 4.813

10.  The X-ray crystal structure of RNA polymerase from Archaea.

Authors:  Akira Hirata; Brianna J Klein; Katsuhiko S Murakami
Journal:  Nature       Date:  2008-01-30       Impact factor: 49.962

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  125 in total

Review 1.  SF1 and SF2 helicases: family matters.

Authors:  Margaret E Fairman-Williams; Ulf-Peter Guenther; Eckhard Jankowsky
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

2.  ATP-stimulated, DNA-mediated redox signaling by XPD, a DNA repair and transcription helicase.

Authors:  Timothy P Mui; Jill O Fuss; Justin P Ishida; John A Tainer; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2011-09-22       Impact factor: 15.419

3.  Functional and structural studies of the nucleotide excision repair helicase XPD suggest a polarity for DNA translocation.

Authors:  Jochen Kuper; Stefanie C Wolski; Gudrun Michels; Caroline Kisker
Journal:  EMBO J       Date:  2011-11-11       Impact factor: 11.598

4.  Subunit architecture of general transcription factor TFIIH.

Authors:  Brian J Gibbons; Edward J Brignole; Maia Azubel; Kenji Murakami; Neil R Voss; David A Bushnell; Francisco J Asturias; Roger D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-20       Impact factor: 11.205

5.  DNA charge transport as a first step in coordinating the detection of lesions by repair proteins.

Authors:  Pamela A Sontz; Timothy P Mui; Jill O Fuss; John A Tainer; Jacqueline K Barton
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

6.  DNA repair and replication fork helicases are differentially affected by alkyl phosphotriester lesion.

Authors:  Avvaru N Suhasini; Joshua A Sommers; Stephen Yu; Yuliang Wu; Ting Xu; Zvi Kelman; Daniel L Kaplan; Robert M Brosh
Journal:  J Biol Chem       Date:  2012-04-12       Impact factor: 5.157

7.  Stimulation of Escherichia coli DNA damage inducible DNA helicase DinG by the single-stranded DNA binding protein SSB.

Authors:  Zishuo Cheng; Aimee Caillet; Binbin Ren; Huangen Ding
Journal:  FEBS Lett       Date:  2012-10-01       Impact factor: 4.124

8.  Tripartite DNA Lesion Recognition and Verification by XPC, TFIIH, and XPA in Nucleotide Excision Repair.

Authors:  Chia-Lung Li; Filip M Golebiowski; Yuki Onishi; Nadine L Samara; Kaoru Sugasawa; Wei Yang
Journal:  Mol Cell       Date:  2015-09-17       Impact factor: 17.970

9.  ARCH domain of XPD, an anchoring platform for CAK that conditions TFIIH DNA repair and transcription activities.

Authors:  Wassim Abdulrahman; Izarn Iltis; Laura Radu; Cathy Braun; Anne Maglott-Roth; Christophe Giraudon; Jean-Marc Egly; Arnaud Poterszman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

10.  Redox control of the DNA damage-inducible protein DinG helicase activity via its iron-sulfur cluster.

Authors:  Binbin Ren; Xuewu Duan; Huangen Ding
Journal:  J Biol Chem       Date:  2008-12-12       Impact factor: 5.157

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