Literature DB >> 19079266

Structure of the motor subunit of type I restriction-modification complex EcoR124I.

Mikalai Lapkouski1, Santosh Panjikar, Pavel Janscak, Ivana Kuta Smatanova, Jannette Carey, Rüdiger Ettrich, Eva Csefalvay.   

Abstract

Type I restriction-modification enzymes act as conventional adenine methylases on hemimethylated DNAs, but unmethylated recognition targets induce them to translocate thousands of base pairs before cleaving distant sites nonspecifically. The first crystal structure of a type I motor subunit responsible for translocation and cleavage suggests how the pentameric translocating complex is assembled and provides a structural framework for translocation of duplex DNA by RecA-like ATPase motors.

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Year:  2008        PMID： 19079266     DOI： 10.1038/nsmb.1523

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


  16 in total

1.  X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA.

Authors:  Harald Dürr; Christian Körner; Marisa Müller; Volker Hickmann; Karl-Peter Hopfner
Journal:  Cell       Date:  2005-05-06       Impact factor: 41.582

2.  When a helicase is not a helicase: dsDNA tracking by the motor protein EcoR124I.

Authors:  Louise K Stanley; Ralf Seidel; Carsten van der Scheer; Nynke H Dekker; Mark D Szczelkun; Cees Dekker
Journal:  EMBO J       Date:  2006-04-27       Impact factor: 11.598

3.  Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa.

Authors:  Toru Sengoku; Osamu Nureki; Akira Nakamura; Satoru Kobayashi; Shigeyuki Yokoyama
Journal:  Cell       Date:  2006-04-21       Impact factor: 41.582

4.  Sequence-specific DNA binding by EcoKI, a type IA DNA restriction enzyme.

Authors:  L M Powell; D T Dryden; N E Murray
Journal:  J Mol Biol       Date:  1998-11-13       Impact factor: 5.469

5.  Initiation of translocation by Type I restriction-modification enzymes is associated with a short DNA extrusion.

Authors:  John van Noort; Thijn van der Heijden; Christina F Dutta; Keith Firman; Cees Dekker
Journal:  Nucleic Acids Res       Date:  2004-12-14       Impact factor: 16.971

6.  Protein-protein and protein-DNA interactions in the type I restriction endonuclease R.EcoR124I.

Authors:  D R Mernagh; P Janscak; K Firman; G G Kneale
Journal:  Biol Chem       Date:  1998 Apr-May       Impact factor: 3.915

Review 7.  Snf2 family ATPases and DExx box helicases: differences and unifying concepts from high-resolution crystal structures.

Authors:  Harald Dürr; Andrew Flaus; Tom Owen-Hughes; Karl-Peter Hopfner
Journal:  Nucleic Acids Res       Date:  2006-08-25       Impact factor: 16.971

8.  Topology of Type II REases revisited; structural classes and the common conserved core.

Authors:  Masha Y Niv; Daniel R Ripoll; Jorge A Vila; Adam Liwo; Eva S Vanamee; Aneel K Aggarwal; Harel Weinstein; Harold A Scheraga
Journal:  Nucleic Acids Res       Date:  2007-03-16       Impact factor: 16.971

9.  Motor step size and ATP coupling efficiency of the dsDNA translocase EcoR124I.

Authors:  Ralf Seidel; Joost G P Bloom; Cees Dekker; Mark D Szczelkun
Journal:  EMBO J       Date:  2008-04-03       Impact factor: 11.598

10.  Conformational changes of a Swi2/Snf2 ATPase during its mechano-chemical cycle.

Authors:  Robert Lewis; Harald Dürr; Karl-Peter Hopfner; Jens Michaelis
Journal:  Nucleic Acids Res       Date:  2008-02-11       Impact factor: 16.971
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  26 in total

Review 1.  SF1 and SF2 helicases: family matters.

Authors:  Margaret E Fairman-Williams; Ulf-Peter Guenther; Eckhard Jankowsky
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

2.  A residue of motif III positions the helicase domains of motor subunit HsdR in restriction-modification enzyme EcoR124I.

Authors:  Dhiraj Sinha; Vitali Bialevich; Katsiaryna Shamayeva; Alena Guzanova; Alexandra Sisakova; Eva Csefalvay; David Reha; Lumir Krejci; Jannette Carey; Marie Weiserova; Rüdiger Ettrich
Journal:  J Mol Model       Date:  2018-06-26       Impact factor: 1.810

3.  Crystal structure of a novel domain of the motor subunit of the Type I restriction enzyme EcoR124 involved in complex assembly and DNA binding.

Authors:  Pavel Grinkevich; Dhiraj Sinha; Iuliia Iermak; Alena Guzanova; Marie Weiserova; Jost Ludwig; Jeroen R Mesters; Rüdiger H Ettrich
Journal:  J Biol Chem       Date:  2018-07-27       Impact factor: 5.157

4.  Interdomain communication in the endonuclease/motor subunit of type I restriction-modification enzyme EcoR124I.

Authors:  Dhiraj Sinha; Katsiaryna Shamayeva; Vyas Ramasubramani; David Řeha; Vitali Bialevich; Morteza Khabiri; Alena Guzanová; Niv Milbar; Marie Weiserová; Eva Csefalvay; Jannette Carey; Rüdiger Ettrich
Journal:  J Mol Model       Date:  2014-06-28       Impact factor: 1.810

5.  Cloning, crystallization and preliminary X-ray diffraction analysis of an intact DNA methyltransferase of a type I restriction-modification enzyme from Vibrio vulnificus.

Authors:  Ly Huynh Thi Yen; Suk-Youl Park; Jeong-Sun Kim
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-03-25       Impact factor: 1.056

6.  pHluorin-assisted expression, purification, crystallization and X-ray diffraction data analysis of the C-terminal domain of the HsdR subunit of the Escherichia coli type I restriction-modification system EcoR124I.

Authors:  Pavel Grinkevich; Iuliia Iermak; Nicholas A Luedtke; Jeroen R Mesters; Rüdiger Ettrich; Jost Ludwig
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-08-09       Impact factor: 1.056

Review 7.  Maintaining a sense of direction during long-range communication on DNA.

Authors:  Mark D Szczelkun; Peter Friedhoff; Ralf Seidel
Journal:  Biochem Soc Trans       Date:  2010-04       Impact factor: 5.407

8.  Structural and functional analysis of the engineered type I DNA methyltransferase EcoR124I(NT).

Authors:  James E Taylor; Phil Callow; Anna Swiderska; G Geoff Kneale
Journal:  J Mol Biol       Date:  2010-03-17       Impact factor: 5.469

9.  Extensive DNA mimicry by the ArdA anti-restriction protein and its role in the spread of antibiotic resistance.

Authors:  Stephen A McMahon; Gareth A Roberts; Kenneth A Johnson; Laurie P Cooper; Huanting Liu; John H White; Lester G Carter; Bansi Sanghvi; Muse Oke; Malcolm D Walkinshaw; Garry W Blakely; James H Naismith; David T F Dryden
Journal:  Nucleic Acids Res       Date:  2009-06-08       Impact factor: 16.971

10.  The fragment structure of a putative HsdR subunit of a type I restriction enzyme from Vibrio vulnificus YJ016: implications for DNA restriction and translocation activity.

Authors:  Nguyen To Uyen; Suk-Youl Park; Ji-Woo Choi; Hyun-Ju Lee; Kosuke Nishi; Jeong-Sun Kim
Journal:  Nucleic Acids Res       Date:  2009-07-22       Impact factor: 16.971
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