Literature DB >> 20444698

Molecular view of 43 S complex formation and start site selection in eukaryotic translation initiation.

Jon R Lorsch1, Thomas E Dever.   

Abstract

A central step to high fidelity protein synthesis is selection of the proper start codon. Recent structural, biochemical, and genetic analyses have provided molecular insights into the coordinated activities of the initiation factors in start codon selection. A molecular model is emerging in which start codon recognition is linked to dynamic reorganization of factors on the ribosome and structural changes in the ribosome itself.

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Year:  2010        PMID： 20444698      PMCID： PMC2898419          DOI： 10.1074/jbc.R110.119743

Source DB:  PubMed          Journal:  J Biol Chem        ISSN： 0021-9258            Impact factor:   5.157


  49 in total

1.  Crystal structure of the C-terminal domain of S.cerevisiae eIF5.

Authors:  Zhiyi Wei; Yanyan Xue; Hang Xu; Weimin Gong
Journal:  J Mol Biol       Date:  2006-03-31       Impact factor: 5.469

2.  Structure of archaeal translational initiation factor 2 betagamma-GDP reveals significant conformational change of the beta-subunit and switch 1 region.

Authors:  Masaaki Sokabe; Min Yao; Naoki Sakai; Shingo Toya; Isao Tanaka
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-21       Impact factor: 11.205

3.  Eukaryotic initiation factor (eIF) 1 carries two distinct eIF5-binding faces important for multifactor assembly and AUG selection.

Authors:  Mikhail Reibarkh; Yasufumi Yamamoto; Chingakham Ranjit Singh; Federico del Rio; Amr Fahmy; Bumjun Lee; Rafael E Luna; Miki Ii; Gerhard Wagner; Katsura Asano
Journal:  J Biol Chem       Date:  2007-11-01       Impact factor: 5.157

4.  Dissociation of eIF1 from the 40S ribosomal subunit is a key step in start codon selection in vivo.

Authors:  Yuen-Nei Cheung; David Maag; Sarah F Mitchell; Christie A Fekete; Mikkel A Algire; Julie E Takacs; Nikolay Shirokikh; Tatyana Pestova; Jon R Lorsch; Alan G Hinnebusch
Journal:  Genes Dev       Date:  2007-05-15       Impact factor: 11.361

5.  Structure of an archaeal heterotrimeric initiation factor 2 reveals a nucleotide state between the GTP and the GDP states.

Authors:  Laure Yatime; Yves Mechulam; Sylvain Blanquet; Emmanuelle Schmitt
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-13       Impact factor: 11.205

6.  Yeast initiator tRNA identity elements cooperate to influence multiple steps of translation initiation.

Authors:  Lee D Kapp; Sarah E Kolitz; Jon R Lorsch
Journal:  RNA       Date:  2006-03-24       Impact factor: 4.942

7.  The crystal structure of the carboxy-terminal domain of human translation initiation factor eIF5.

Authors:  Christoph Bieniossek; Patrick Schütz; Mario Bumann; Andreas Limacher; Isabel Uson; Ulrich Baumann
Journal:  J Mol Biol       Date:  2006-05-24       Impact factor: 5.469

8.  N- and C-terminal residues of eIF1A have opposing effects on the fidelity of start codon selection.

Authors:  Christie A Fekete; Sarah F Mitchell; Vera A Cherkasova; Drew Applefield; Mikkel A Algire; David Maag; Adesh K Saini; Jon R Lorsch; Alan G Hinnebusch
Journal:  EMBO J       Date:  2007-03-01       Impact factor: 11.598

9.  The eukaryotic translation initiation factors eIF1 and eIF1A induce an open conformation of the 40S ribosome.

Authors:  Lori A Passmore; T Martin Schmeing; David Maag; Drew J Applefield; Michael G Acker; Mikkel A Algire; Jon R Lorsch; V Ramakrishnan
Journal:  Mol Cell       Date:  2007-04-13       Impact factor: 17.970

10.  Structure of the eukaryotic initiation factor (eIF) 5 reveals a fold common to several translation factors.

Authors:  Maria R Conte; Geoff Kelly; Jeff Babon; Domenico Sanfelice; James Youell; Stephen J Smerdon; Christopher G Proud
Journal:  Biochemistry       Date:  2006-04-11       Impact factor: 3.162
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  44 in total

Review 1.  One core, two shells: bacterial and eukaryotic ribosomes.

Authors:  Sergey Melnikov; Adam Ben-Shem; Nicolas Garreau de Loubresse; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

2.  Thematic minireview series on antibacterial natural products: new tricks for old dogs.

Authors:  Chaitan Khosla
Journal:  J Biol Chem       Date:  2010-06-03       Impact factor: 5.157

3.  Bypassing of stems versus linear base-by-base inspection of mammalian mRNAs during ribosomal scanning.

Authors:  Irina S Abaeva; Assen Marintchev; Vera P Pisareva; Christopher U T Hellen; Tatyana V Pestova
Journal:  EMBO J       Date:  2010-11-26       Impact factor: 11.598

4.  Interaction between 25S rRNA A loop and eukaryotic translation initiation factor 5B promotes subunit joining and ensures stringent AUG selection.

Authors:  Hiroyuki Hiraishi; Byung-Sik Shin; Tsuyoshi Udagawa; Naoki Nemoto; Wasimul Chowdhury; Jymie Graham; Christian Cox; Megan Reid; Susan J Brown; Katsura Asano
Journal:  Mol Cell Biol       Date:  2013-07-08       Impact factor: 4.272

Review 5.  Toward a Kinetic Understanding of Eukaryotic Translation.

Authors:  Masaaki Sokabe; Christopher S Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

6.  Paip1, an effective stimulator of translation initiation, is targeted by WWP2 for ubiquitination and degradation.

Authors:  Yanrong Lv; Kai Zhang; Haidong Gao
Journal:  Mol Cell Biol       Date:  2014-09-29       Impact factor: 4.272

7.  Mechanism of cytoplasmic mRNA translation.

Authors:  Karen S Browning; Julia Bailey-Serres
Journal:  Arabidopsis Book       Date:  2015-04-24

Review 8.  Principles of translational control: an overview.

Authors:  John W B Hershey; Nahum Sonenberg; Michael B Mathews
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-12-01       Impact factor: 10.005

9.  Sequential eukaryotic translation initiation factor 5 (eIF5) binding to the charged disordered segments of eIF4G and eIF2β stabilizes the 48S preinitiation complex and promotes its shift to the initiation mode.

Authors:  Chingakham Ranjit Singh; Ryosuke Watanabe; Wasimul Chowdhury; Hiroyuki Hiraishi; Marcelo J Murai; Yasufumi Yamamoto; David Miles; Yuka Ikeda; Masayo Asano; Katsura Asano
Journal:  Mol Cell Biol       Date:  2012-07-30       Impact factor: 4.272

10.  Deleterious mutation in FDX1L gene is associated with a novel mitochondrial muscle myopathy.

Authors:  Ronen Spiegel; Ann Saada; Jonatan Halvardson; Devorah Soiferman; Avraham Shaag; Simon Edvardson; Yoseph Horovitz; Morad Khayat; Stavit A Shalev; Lars Feuk; Orly Elpeleg
Journal:  Eur J Hum Genet       Date:  2013-11-27       Impact factor: 4.246
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