Literature DB >> 17504939

Dissociation of eIF1 from the 40S ribosomal subunit is a key step in start codon selection in vivo.

Yuen-Nei Cheung1, David Maag, Sarah F Mitchell, Christie A Fekete, Mikkel A Algire, Julie E Takacs, Nikolay Shirokikh, Tatyana Pestova, Jon R Lorsch, Alan G Hinnebusch.   

Abstract

Selection of the AUG start codon is a key step in translation initiation requiring hydrolysis of GTP in the eIF2*GTP*Met-tRNA(i)(Met) ternary complex (TC) and subsequent P(i) release from eIF2*GDP*P(i). It is thought that eIF1 prevents recognition of non-AUGs by promoting scanning and blocking P(i) release at non-AUG codons. We show that Sui(-) mutations in Saccharomyces cerevisiae eIF1, which increase initiation at UUG codons, reduce interaction of eIF1 with 40S subunits in vitro and in vivo, and both defects are diminished in cells by overexpressing the mutant proteins. Remarkably, Sui(-) mutation ISQLG(93-97)ASQAA (abbreviated 93-97) accelerates eIF1 dissociation and P(i) release from reconstituted preinitiation complexes (PICs), whereas a hyperaccuracy mutation in eIF1A (that suppresses Sui(-) mutations) decreases the eIF1 off-rate. These findings demonstrate that eIF1 dissociation is a critical step in start codon selection, which is modulated by eIF1A. We also describe Gcd(-) mutations in eIF1 that impair TC loading on 40S subunits or destabilize the multifactor complex containing eIF1, eIF3, eIF5, and TC, showing that eIF1 promotes PIC assembly in vivo beyond its important functions in AUG selection.

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Year:  2007        PMID: 17504939      PMCID: PMC1865493          DOI: 10.1101/gad.1528307

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  32 in total

1.  The joining of ribosomal subunits in eukaryotes requires eIF5B.

Authors:  T V Pestova; I B Lomakin; J H Lee; S K Choi; T E Dever; C U Hellen
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

Review 2.  Translational regulation of GCN4 and the general amino acid control of yeast.

Authors:  Alan G Hinnebusch
Journal:  Annu Rev Microbiol       Date:  2005       Impact factor: 15.500

3.  Pi release from eIF2, not GTP hydrolysis, is the step controlled by start-site selection during eukaryotic translation initiation.

Authors:  Mikkel A Algire; David Maag; Jon R Lorsch
Journal:  Mol Cell       Date:  2005-10-28       Impact factor: 17.970

4.  Communication between eukaryotic translation initiation factors 5 and 1A within the ribosomal pre-initiation complex plays a role in start site selection.

Authors:  David Maag; Mikkel A Algire; Jon R Lorsch
Journal:  J Mol Biol       Date:  2005-12-15       Impact factor: 5.469

5.  The eukaryotic initiation factor (eIF) 5 HEAT domain mediates multifactor assembly and scanning with distinct interfaces to eIF1, eIF2, eIF3, and eIF4G.

Authors:  Yasufumi Yamamoto; Chingakham Ranjit Singh; Assen Marintchev; Nathan S Hall; Ernest M Hannig; Gerhard Wagner; Katsura Asano
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-27       Impact factor: 11.205

6.  A conformational change in the eukaryotic translation preinitiation complex and release of eIF1 signal recognition of the start codon.

Authors:  David Maag; Christie A Fekete; Zygmunt Gryczynski; Jon R Lorsch
Journal:  Mol Cell       Date:  2005-01-21       Impact factor: 17.970

7.  Eukaryotic ribosomes require initiation factors 1 and 1A to locate initiation codons.

Authors:  T V Pestova; S I Borukhov; C U Hellen
Journal:  Nature       Date:  1998-08-27       Impact factor: 49.962

8.  The eIF1A C-terminal domain promotes initiation complex assembly, scanning and AUG selection in vivo.

Authors:  Christie A Fekete; Drew J Applefield; Stephen A Blakely; Nikolay Shirokikh; Tatyana Pestova; Jon R Lorsch; Alan G Hinnebusch
Journal:  EMBO J       Date:  2005-09-29       Impact factor: 11.598

9.  Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis of eIF2-bound GTP.

Authors:  Anett Unbehaun; Sergei I Borukhov; Christopher U T Hellen; Tatyana V Pestova
Journal:  Genes Dev       Date:  2004-12-15       Impact factor: 11.361

10.  Identification of a translation initiation factor 3 (eIF3) core complex, conserved in yeast and mammals, that interacts with eIF5.

Authors:  L Phan; X Zhang; K Asano; J Anderson; H P Vornlocher; J R Greenberg; J Qin; A G Hinnebusch
Journal:  Mol Cell Biol       Date:  1998-08       Impact factor: 4.272

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  95 in total

1.  Initiation context modulates autoregulation of eukaryotic translation initiation factor 1 (eIF1).

Authors:  Ivaylo P Ivanov; Gary Loughran; Matthew S Sachs; John F Atkins
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

2.  Functional elements in initiation factors 1, 1A, and 2β discriminate against poor AUG context and non-AUG start codons.

Authors:  Pilar Martin-Marcos; Yuen-Nei Cheung; Alan G Hinnebusch
Journal:  Mol Cell Biol       Date:  2011-09-19       Impact factor: 4.272

Review 3.  A mechanistic overview of translation initiation in eukaryotes.

Authors:  Colin Echeverría Aitken; Jon R Lorsch
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

Review 4.  Molecular view of 43 S complex formation and start site selection in eukaryotic translation initiation.

Authors:  Jon R Lorsch; Thomas E Dever
Journal:  J Biol Chem       Date:  2010-05-05       Impact factor: 5.157

5.  The eukaryotic initiation factor (eIF) 4G HEAT domain promotes translation re-initiation in yeast both dependent on and independent of eIF4A mRNA helicase.

Authors:  Ryosuke Watanabe; Marcelo Jun Murai; Chingakham Ranjit Singh; Stephanie Fox; Miki Ii; Katsura Asano
Journal:  J Biol Chem       Date:  2010-05-12       Impact factor: 5.157

6.  GTP-independent tRNA delivery to the ribosomal P-site by a novel eukaryotic translation factor.

Authors:  Sergey E Dmitriev; Ilya M Terenin; Dmitri E Andreev; Pavel A Ivanov; Jacov E Dunaevsky; William C Merrick; Ivan N Shatsky
Journal:  J Biol Chem       Date:  2010-06-21       Impact factor: 5.157

7.  The C-terminal region of eukaryotic translation initiation factor 3a (eIF3a) promotes mRNA recruitment, scanning, and, together with eIF3j and the eIF3b RNA recognition motif, selection of AUG start codons.

Authors:  Wen-Ling Chiu; Susan Wagner; Anna Herrmannová; Laxminarayana Burela; Fan Zhang; Adesh K Saini; Leos Valásek; Alan G Hinnebusch
Journal:  Mol Cell Biol       Date:  2010-06-28       Impact factor: 4.272

8.  The bacterial toxin RelE induces specific mRNA cleavage in the A site of the eukaryote ribosome.

Authors:  Dmitri Andreev; Vasili Hauryliuk; Ilya Terenin; Sergey Dmitriev; Måns Ehrenberg; Ivan Shatsky
Journal:  RNA       Date:  2007-12-14       Impact factor: 4.942

9.  Structure of an archaeal heterotrimeric initiation factor 2 reveals a nucleotide state between the GTP and the GDP states.

Authors:  Laure Yatime; Yves Mechulam; Sylvain Blanquet; Emmanuelle Schmitt
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-13       Impact factor: 11.205

Review 10.  Regulation of translation initiation in eukaryotes: mechanisms and biological targets.

Authors:  Nahum Sonenberg; Alan G Hinnebusch
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

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