Literature DB >> 20442713

Insulators and promoters: closer than we think.

Jesse R Raab1, Rohinton T Kamakaka.   

Abstract

Insulators prevent promiscuous gene regulation by restricting the action of enhancers and silencers. Recent studies have revealed a number of similarities between insulators and promoters, including binding of specific transcription factors, chromatin-modification signatures and localization to specific subnuclear positions. We propose that enhancer-blockers and silencing barrier-insulators might have evolved as specialized derivatives of promoters and that the two types of element use related mechanisms to mediate their distinct functions. These insights can help to reconcile different models of insulator action.

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Year:  2010        PMID: 20442713      PMCID: PMC3477808          DOI: 10.1038/nrg2765

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  63 in total

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Journal:  Exp Hematol       Date:  2005-03       Impact factor: 3.084

Review 2.  Remote control of gene transcription.

Authors:  Adam G West; Peter Fraser
Journal:  Hum Mol Genet       Date:  2005-04-15       Impact factor: 6.150

3.  Barrier function at HMR.

Authors:  Masaya Oki; Rohinton T Kamakaka
Journal:  Mol Cell       Date:  2005-09-02       Impact factor: 17.970

Review 4.  Epigenetic silencing mechanisms in budding yeast and fruit fly: different paths, same destinations.

Authors:  Vincenzo Pirrotta; David S Gross
Journal:  Mol Cell       Date:  2005-05-13       Impact factor: 17.970

Review 5.  Insulators: exploiting transcriptional and epigenetic mechanisms.

Authors:  Miklos Gaszner; Gary Felsenfeld
Journal:  Nat Rev Genet       Date:  2006-08-15       Impact factor: 53.242

Review 6.  Chromatin insulators.

Authors:  Lourdes Valenzuela; Rohinton T Kamakaka
Journal:  Annu Rev Genet       Date:  2006       Impact factor: 16.830

Review 7.  The nuclear envelope and transcriptional control.

Authors:  Asifa Akhtar; Susan M Gasser
Journal:  Nat Rev Genet       Date:  2007-06-05       Impact factor: 53.242

8.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

9.  The ubiquitin ligase dTopors directs the nuclear organization of a chromatin insulator.

Authors:  Maya Capelson; Victor G Corces
Journal:  Mol Cell       Date:  2005-10-07       Impact factor: 17.970

Review 10.  RNAi-directed assembly of heterochromatin in fission yeast.

Authors:  André Verdel; Danesh Moazed
Journal:  FEBS Lett       Date:  2005-09-27       Impact factor: 4.124

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  82 in total

1.  A barrier-only boundary element delimits the formation of facultative heterochromatin in Drosophila melanogaster and vertebrates.

Authors:  Nianwei Lin; Xingguo Li; Kairong Cui; Iouri Chepelev; Feng Tie; Bo Liu; Guangyao Li; Peter Harte; Keji Zhao; Suming Huang; Lei Zhou
Journal:  Mol Cell Biol       Date:  2011-04-25       Impact factor: 4.272

2.  CTCF-dependent chromatin insulator as a built-in attenuator of angiogenesis.

Authors:  Jianrong Lu; Ming Tang
Journal:  Transcription       Date:  2012-03-01

Review 3.  Minimizing the unpredictability of transgene expression in plants: the role of genetic insulators.

Authors:  Stacy D Singer; Zongrang Liu; Kerik D Cox
Journal:  Plant Cell Rep       Date:  2011-10-11       Impact factor: 4.570

4.  Learning about genomics and disease from the anucleate human red blood cell.

Authors:  Edward J Benz
Journal:  J Clin Invest       Date:  2010-11-22       Impact factor: 14.808

Review 5.  Enhancer-promoter interference and its prevention in transgenic plants.

Authors:  Stacy D Singer; Kerik D Cox; Zongrang Liu
Journal:  Plant Cell Rep       Date:  2010-12-19       Impact factor: 4.570

6.  Roles of DNA looping in enhancer-blocking activity.

Authors:  Naoko Tokuda; Masaki Sasai; George Chikenji
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

7.  The genome in space and time: does form always follow function? How does the spatial and temporal organization of a eukaryotic genome reflect and influence its functions?

Authors:  Zhijun Duan; Carl Anthony Blau
Journal:  Bioessays       Date:  2012-07-06       Impact factor: 4.345

Review 8.  Synthetic promoters in planta.

Authors:  Nrisingha Dey; Shayan Sarkar; Sefali Acharya; Indu B Maiti
Journal:  Planta       Date:  2015-08-07       Impact factor: 4.116

9.  Overlapping but Distinct Sequences Play Roles in the Insulator and Promoter Activities of the Drosophila BEAF-Dependent scs' Insulator.

Authors:  Mukesh Maharjan; J Keller McKowen; Craig M Hart
Journal:  Genetics       Date:  2020-06-17       Impact factor: 4.562

Review 10.  Targeted gene therapies: tools, applications, optimization.

Authors:  Olivier Humbert; Luther Davis; Nancy Maizels
Journal:  Crit Rev Biochem Mol Biol       Date:  2012 May-Jun       Impact factor: 8.250

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