Literature DB >> 22530743

Targeted gene therapies: tools, applications, optimization.

Olivier Humbert1, Luther Davis, Nancy Maizels.   

Abstract

Many devastating human diseases are caused by mutations in a single gene that prevent a somatic cell from carrying out its essential functions, or by genetic changes acquired as a result of infectious disease or in the course of cell transformation. Targeted gene therapies have emerged as potential strategies for treatment of such diseases. These therapies depend upon rare-cutting endonucleases to cleave at specific sites in or near disease genes. Targeted gene correction provides a template for homology-directed repair, enabling the cell's own repair pathways to erase the mutation and replace it with the correct sequence. Targeted gene disruption ablates the disease gene, disabling its function. Gene targeting can also promote other kinds of genome engineering, including mutation, insertion, or gene deletion. Targeted gene therapies present significant advantages compared to approaches to gene therapy that depend upon delivery of stably expressing transgenes. Recent progress has been fueled by advances in nuclease discovery and design, and by new strategies that maximize efficiency of targeting and minimize off-target damage. Future progress will build on deeper mechanistic understanding of critical factors and pathways.

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Year:  2012        PMID: 22530743      PMCID: PMC3338207          DOI: 10.3109/10409238.2012.658112

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  190 in total

1.  Biochemical evidence for Ku-independent backup pathways of NHEJ.

Authors:  Huichen Wang; Ange Ronel Perrault; Yoshihiko Takeda; Wei Qin; Hongyan Wang; George Iliakis
Journal:  Nucleic Acids Res       Date:  2003-09-15       Impact factor: 16.971

2.  RAG proteins shepherd double-strand breaks to a specific pathway, suppressing error-prone repair, but RAG nicking initiates homologous recombination.

Authors:  Gregory S Lee; Matthew B Neiditch; Sandra S Salus; David B Roth
Journal:  Cell       Date:  2004-04-16       Impact factor: 41.582

3.  Treatment of advanced leukemia in mice with mRNA engineered T cells.

Authors:  David M Barrett; Yangbing Zhao; Xiaojun Liu; Shuguang Jiang; Carmine Carpenito; Michael Kalos; Richard G Carroll; Carl H June; Stephan A Grupp
Journal:  Hum Gene Ther       Date:  2011-09-23       Impact factor: 5.695

Review 4.  The influence of heterochromatin on DNA double strand break repair: Getting the strong, silent type to relax.

Authors:  Aaron A Goodarzi; Penny Jeggo; Markus Lobrich
Journal:  DNA Repair (Amst)       Date:  2010-10-30

5.  Site-specific recombination determined by I-SceI, a mitochondrial group I intron-encoded endonuclease expressed in the yeast nucleus.

Authors:  A Plessis; A Perrin; J E Haber; B Dujon
Journal:  Genetics       Date:  1992-03       Impact factor: 4.562

6.  A 24-base-pair DNA sequence from the MAT locus stimulates intergenic recombination in yeast.

Authors:  J A Nickoloff; E Y Chen; F Heffron
Journal:  Proc Natl Acad Sci U S A       Date:  1986-10       Impact factor: 11.205

7.  AAV's anatomy: roadmap for optimizing vectors for translational success.

Authors:  Angela M Mitchell; Sarah C Nicolson; Jayme K Warischalk; R Jude Samulski
Journal:  Curr Gene Ther       Date:  2010-10       Impact factor: 4.391

8.  Repair of a specific double-strand break generated within a mammalian chromosome by yeast endonuclease I-SceI.

Authors:  T Lukacsovich; D Yang; A S Waldman
Journal:  Nucleic Acids Res       Date:  1994-12-25       Impact factor: 16.971

9.  Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes.

Authors:  Ting Li; Sheng Huang; Xuefeng Zhao; David A Wright; Susan Carpenter; Martin H Spalding; Donald P Weeks; Bing Yang
Journal:  Nucleic Acids Res       Date:  2011-03-31       Impact factor: 16.971

10.  Targeted plasmid integration into the human genome by an engineered zinc-finger recombinase.

Authors:  Charles A Gersbach; Thomas Gaj; Russell M Gordley; Andrew C Mercer; Carlos F Barbas
Journal:  Nucleic Acids Res       Date:  2011-06-07       Impact factor: 16.971

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  11 in total

Review 1.  Quantifying on- and off-target genome editing.

Authors:  Ayal Hendel; Eli J Fine; Gang Bao; Matthew H Porteus
Journal:  Trends Biotechnol       Date:  2015-01-13       Impact factor: 19.536

2.  Adeno-Associated Viral Vector Immobilization and Local Delivery from Bare Metal Surfaces.

Authors:  Ben B Pressly; Bahman Hooshdaran; Ivan S Alferiev; Michael Chorny; Robert J Levy; Ilia Fishbein
Journal:  Methods Mol Biol       Date:  2022

Review 3.  TAL effectors: highly adaptable phytobacterial virulence factors and readily engineered DNA-targeting proteins.

Authors:  Erin L Doyle; Barry L Stoddard; Daniel F Voytas; Adam J Bogdanove
Journal:  Trends Cell Biol       Date:  2013-05-23       Impact factor: 20.808

4.  Novel fluorescent genome editing reporters for monitoring DNA repair pathway utilization at endonuclease-induced breaks.

Authors:  Ryan Kuhar; Kamila S Gwiazda; Olivier Humbert; Tyler Mandt; Joey Pangallo; Michelle Brault; Iram Khan; Nancy Maizels; David J Rawlings; Andrew M Scharenberg; Michael T Certo
Journal:  Nucleic Acids Res       Date:  2013-10-10       Impact factor: 16.971

5.  Stimulation of oligonucleotide-directed gene correction by Redβ expression and MSH2 depletion in human HT1080 cells.

Authors:  Ke Xu; A Francis Stewart; Andrew C G Porter
Journal:  Mol Cells       Date:  2014-11-26       Impact factor: 5.034

Review 6.  Cracking the Monoubiquitin Code of Genetic Diseases.

Authors:  Raj Nayan Sewduth; Maria Francesca Baietti; Anna A Sablina
Journal:  Int J Mol Sci       Date:  2020-04-25       Impact factor: 5.923

Review 7.  Targeted Therapy in Cardiovascular Disease: A Precision Therapy Era.

Authors:  Mengda Xu; Jiangping Song
Journal:  Front Pharmacol       Date:  2021-04-16       Impact factor: 5.810

8.  Epigenetic modification of the repair donor regulates targeted gene correction.

Authors:  Olivier Humbert; Nancy Maizels
Journal:  Mol Ther Nucleic Acids       Date:  2012-10-23       Impact factor: 10.183

9.  Enhanced homology-directed human genome engineering by controlled timing of CRISPR/Cas9 delivery.

Authors:  Steven Lin; Brett T Staahl; Ravi K Alla; Jennifer A Doudna
Journal:  Elife       Date:  2014-12-15       Impact factor: 8.140

Review 10.  CRISPR Gene Therapy: Applications, Limitations, and Implications for the Future.

Authors:  Fathema Uddin; Charles M Rudin; Triparna Sen
Journal:  Front Oncol       Date:  2020-08-07       Impact factor: 6.244

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