Literature DB >> 20429505

Conformational gating of electron transfer from the nitrogenase Fe protein to MoFe protein.

Karamatullah Danyal1, Diana Mayweather, Dennis R Dean, Lance C Seefeldt, Brian M Hoffman.   

Abstract

The nitrogenase Fe protein contains a [4Fe-4S] cluster and delivers one electron at a time to the catalytic MoFe protein. During this electron delivery, the Fe protein in its [4Fe-4S](1+) reduced state (Fe(red)) binds two MgATP and forms a complex with the MoFe protein, with subsequent transfer of one electron to the MoFe protein in a reaction coupled to the hydrolysis of two ATP. Crystal structures with the nitrogenase complex in different nucleotide-bound states show major conformational changes which provide a structural underpinning to suggestions that intercomponent electron transfer (ET) is "gated" by conformational changes of the complex and/or of its component proteins. Although electron delivery is coupled to ATP hydrolysis, their connection is puzzling, for it appears that ET precedes both ATP hydrolysis and Pi release. We here test the gating hypothesis with studies of the intracomplex oxidation of Fe(red) by MoFe protein in the presence of a variety of solutes. Conformational control of this process (gating) is revealed by the finding that it responds to changes in osmotic pressure (but not viscosity), with no fewer than 80 waters being bound during the reaction. The absence of a solvent kinetic isotope effect further implies that ATP hydrolysis does not occur during the rate-limiting step of ET.

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Year:  2010        PMID: 20429505      PMCID: PMC2892898          DOI: 10.1021/ja101737f

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  15 in total

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Authors:  P E Wilson; A C Nyborg; G D Watt
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2.  Mechanism of Molybdenum Nitrogenase.

Authors:  Barbara K. Burgess; David J. Lowe
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

3.  Macromolecules and water: probing with osmotic stress.

Authors:  V A Parsegian; R P Rand; D C Rau
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

4.  Effects of deuterium on the kinetics of beef heart mitochondrial ATPase.

Authors:  J L Urbauer; L J Dorgan; S M Schuster
Journal:  Arch Biochem Biophys       Date:  1984-06       Impact factor: 4.013

5.  Catalytic and biophysical properties of a nitrogenase Apo-MoFe protein produced by a nifB-deletion mutant of Azotobacter vinelandii.

Authors:  J Christiansen; P J Goodwin; W N Lanzilotta; L C Seefeldt; D R Dean
Journal:  Biochemistry       Date:  1998-09-08       Impact factor: 3.162

6.  Nitrogenase complexes: multiple docking sites for a nucleotide switch protein.

Authors:  F Akif Tezcan; Jens T Kaiser; Debarshi Mustafi; Mika Y Walton; James B Howard; Douglas C Rees
Journal:  Science       Date:  2005-08-26       Impact factor: 47.728

7.  Electron transfer in nitrogenase analyzed by Marcus theory: evidence for gating by MgATP.

Authors:  W N Lanzilotta; V D Parker; L C Seefeldt
Journal:  Biochemistry       Date:  1998-01-06       Impact factor: 3.162

Review 8.  Mechanism of Mo-dependent nitrogenase.

Authors:  Lance C Seefeldt; Brian M Hoffman; Dennis R Dean
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

9.  Kinetic-dynamic model for conformational control of an electron transfer photocycle: mixed-metal hemoglobin hybrids.

Authors:  Ami D Patel; Judith M Nocek; Brian M Hoffman
Journal:  J Phys Chem B       Date:  2008-08-21       Impact factor: 2.991

10.  Conformations generated during turnover of the Azotobacter vinelandii nitrogenase MoFe protein and their relationship to physiological function.

Authors:  Karl Fisher; David J Lowe; Pedro Tavares; Alice S Pereira; Boi Hanh Huynh; Dale Edmondson; William E Newton
Journal:  J Inorg Biochem       Date:  2007-08-09       Impact factor: 4.155

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  29 in total

1.  Electron transfer within nitrogenase: evidence for a deficit-spending mechanism.

Authors:  Karamatullah Danyal; Dennis R Dean; Brian M Hoffman; Lance C Seefeldt
Journal:  Biochemistry       Date:  2011-10-11       Impact factor: 3.162

2.  Electron transfer precedes ATP hydrolysis during nitrogenase catalysis.

Authors:  Simon Duval; Karamatullah Danyal; Sudipta Shaw; Anna K Lytle; Dennis R Dean; Brian M Hoffman; Edwin Antony; Lance C Seefeldt
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-23       Impact factor: 11.205

3.  Energy Transduction in Nitrogenase.

Authors:  Lance C Seefeldt; Brian M Hoffman; John W Peters; Simone Raugei; David N Beratan; Edwin Antony; Dennis R Dean
Journal:  Acc Chem Res       Date:  2018-08-10       Impact factor: 22.384

4.  Tyrosine-Coordinated P-Cluster in G. diazotrophicus Nitrogenase: Evidence for the Importance of O-Based Ligands in Conformationally Gated Electron Transfer.

Authors:  Cedric P Owens; Faith E H Katz; Cole H Carter; Victoria F Oswald; F Akif Tezcan
Journal:  J Am Chem Soc       Date:  2016-08-08       Impact factor: 15.419

5.  Redox-dependent complex formation by an ATP-dependent activator of the corrinoid/iron-sulfur protein.

Authors:  Sandra E Hennig; Jae-Hun Jeoung; Sebastian Goetzl; Holger Dobbek
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

6.  Temperature invariance of the nitrogenase electron transfer mechanism.

Authors:  Diana Mayweather; Karamatullah Danyal; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  Biochemistry       Date:  2012-10-10       Impact factor: 3.162

7.  Unraveling the interactions of the physiological reductant flavodoxin with the different conformations of the Fe protein in the nitrogenase cycle.

Authors:  Natasha Pence; Monika Tokmina-Lukaszewska; Zhi-Yong Yang; Rhesa N Ledbetter; Lance C Seefeldt; Brian Bothner; John W Peters
Journal:  J Biol Chem       Date:  2017-08-07       Impact factor: 5.157

Review 8.  Electron transfer in nitrogenase catalysis.

Authors:  Lance C Seefeldt; Brian M Hoffman; Dennis R Dean
Journal:  Curr Opin Chem Biol       Date:  2012-03-05       Impact factor: 8.822

9.  Uncoupling nitrogenase: catalytic reduction of hydrazine to ammonia by a MoFe protein in the absence of Fe protein-ATP.

Authors:  Karamatullah Danyal; Boyd S Inglet; Kylie A Vincent; Brett M Barney; Brian M Hoffman; Fraser A Armstrong; Dennis R Dean; Lance C Seefeldt
Journal:  J Am Chem Soc       Date:  2010-09-29       Impact factor: 15.419

10.  Negative cooperativity in the nitrogenase Fe protein electron delivery cycle.

Authors:  Karamatullah Danyal; Sudipta Shaw; Taylor R Page; Simon Duval; Masaki Horitani; Amy R Marts; Dmitriy Lukoyanov; Dennis R Dean; Simone Raugei; Brian M Hoffman; Lance C Seefeldt; Edwin Antony
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-04       Impact factor: 11.205

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