Literature DB >> 24062462

Electron transfer precedes ATP hydrolysis during nitrogenase catalysis.

Simon Duval1, Karamatullah Danyal, Sudipta Shaw, Anna K Lytle, Dennis R Dean, Brian M Hoffman, Edwin Antony, Lance C Seefeldt.   

Abstract

The biological reduction of N2 to NH3 catalyzed by Mo-dependent nitrogenase requires at least eight rounds of a complex cycle of events associated with ATP-driven electron transfer (ET) from the Fe protein to the catalytic MoFe protein, with each ET coupled to the hydrolysis of two ATP molecules. Although steps within this cycle have been studied for decades, the nature of the coupling between ATP hydrolysis and ET, in particular the order of ET and ATP hydrolysis, has been elusive. Here, we have measured first-order rate constants for each key step in the reaction sequence, including direct measurement of the ATP hydrolysis rate constant: kATP = 70 s(-1), 25 °C. Comparison of the rate constants establishes that the reaction sequence involves four sequential steps: (i) conformationally gated ET (kET = 140 s(-1), 25 °C), (ii) ATP hydrolysis (kATP = 70 s(-1), 25 °C), (iii) Phosphate release (kPi = 16 s(-1), 25 °C), and (iv) Fe protein dissociation from the MoFe protein (kdiss = 6 s(-1), 25 °C). These findings allow completion of the thermodynamic cycle undergone by the Fe protein, showing that the energy of ATP binding and protein-protein association drive ET, with subsequent ATP hydrolysis and Pi release causing dissociation of the complex between the Fe(ox)(ADP)2 protein and the reduced MoFe protein.

Entities:  

Keywords:  metalloprotein; nitrogen fixation

Mesh:

Substances:

Year:  2013        PMID: 24062462      PMCID: PMC3799366          DOI: 10.1073/pnas.1311218110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

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Journal:  FEBS Lett       Date:  1978-11-15       Impact factor: 4.124

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Journal:  Biochemistry       Date:  1994-07-12       Impact factor: 3.162

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  24 in total

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Authors:  Dmitriy Lukoyanov; Nimesh Khadka; Zhi-Yong Yang; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2016-01-20       Impact factor: 15.419

Review 2.  Nitrogenase FeMo cofactor: an atomic structure in three simple steps.

Authors:  Oliver Einsle
Journal:  J Biol Inorg Chem       Date:  2014-02-21       Impact factor: 3.358

3.  Energy Transduction in Nitrogenase.

Authors:  Lance C Seefeldt; Brian M Hoffman; John W Peters; Simone Raugei; David N Beratan; Edwin Antony; Dennis R Dean
Journal:  Acc Chem Res       Date:  2018-08-10       Impact factor: 22.384

4.  Unraveling the interactions of the physiological reductant flavodoxin with the different conformations of the Fe protein in the nitrogenase cycle.

Authors:  Natasha Pence; Monika Tokmina-Lukaszewska; Zhi-Yong Yang; Rhesa N Ledbetter; Lance C Seefeldt; Brian Bothner; John W Peters
Journal:  J Biol Chem       Date:  2017-08-07       Impact factor: 5.157

Review 5.  On the beneficent thickness of water.

Authors:  E Branscomb; M J Russell
Journal:  Interface Focus       Date:  2019-10-18       Impact factor: 3.906

Review 6.  Reactivity, Mechanism, and Assembly of the Alternative Nitrogenases.

Authors:  Andrew J Jasniewski; Chi Chung Lee; Markus W Ribbe; Yilin Hu
Journal:  Chem Rev       Date:  2020-03-04       Impact factor: 60.622

7.  Exploring Electron/Proton Transfer and Conformational Changes in the Nitrogenase MoFe Protein and FeMo-cofactor Through Cryoreduction/EPR Measurements.

Authors:  Roman Davydov; Nimesh Khadka; Zhi-Yong Yang; Andrew J Fielding; Dmitriy Lukoyanov; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  Isr J Chem       Date:  2016-07-29       Impact factor: 3.333

8.  Substrate recognition induces sequential electron transfer across subunits in the nitrogenase-like DPOR complex.

Authors:  Elliot I Corless; Brian Bennett; Edwin Antony
Journal:  J Biol Chem       Date:  2020-07-31       Impact factor: 5.157

9.  Structural characterization of the P1+ intermediate state of the P-cluster of nitrogenase.

Authors:  Stephen M Keable; Oleg A Zadvornyy; Lewis E Johnson; Bojana Ginovska; Andrew J Rasmussen; Karamatullah Danyal; Brian J Eilers; Gregory A Prussia; Axl X LeVan; Simone Raugei; Lance C Seefeldt; John W Peters
Journal:  J Biol Chem       Date:  2018-05-02       Impact factor: 5.157

10.  Negative cooperativity in the nitrogenase Fe protein electron delivery cycle.

Authors:  Karamatullah Danyal; Sudipta Shaw; Taylor R Page; Simon Duval; Masaki Horitani; Amy R Marts; Dmitriy Lukoyanov; Dennis R Dean; Simone Raugei; Brian M Hoffman; Lance C Seefeldt; Edwin Antony
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-04       Impact factor: 11.205

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