Literature DB >> 27698129

Negative cooperativity in the nitrogenase Fe protein electron delivery cycle.

Karamatullah Danyal1, Sudipta Shaw1, Taylor R Page2, Simon Duval1, Masaki Horitani2, Amy R Marts2, Dmitriy Lukoyanov2, Dennis R Dean3, Simone Raugei4, Brian M Hoffman5, Lance C Seefeldt6, Edwin Antony7.   

Abstract

Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to two ammonia (NH3) molecules through the participation of its two protein components, the MoFe and Fe proteins. Electron transfer (ET) from the Fe protein to the catalytic MoFe protein involves a series of synchronized events requiring the transient association of one Fe protein with each αβ half of the α2β2 MoFe protein. This process is referred to as the Fe protein cycle and includes binding of two ATP to an Fe protein, association of an Fe protein with the MoFe protein, ET from the Fe protein to the MoFe protein, hydrolysis of the two ATP to two ADP and two Pi for each ET, Pi release, and dissociation of oxidized Fe protein-(ADP)2 from the MoFe protein. Because the MoFe protein tetramer has two separate αβ active units, it participates in two distinct Fe protein cycles. Quantitative kinetic measurements of ET, ATP hydrolysis, and Pi release during the presteady-state phase of electron delivery demonstrate that the two halves of the ternary complex between the MoFe protein and two reduced Fe protein-(ATP)2 do not undergo the Fe protein cycle independently. Instead, the data are globally fit with a two-branch negative-cooperativity kinetic model in which ET in one-half of the complex partially suppresses this process in the other. A possible mechanism for communication between the two halves of the nitrogenase complex is suggested by normal-mode calculations showing correlated and anticorrelated motions between the two halves.

Entities:  

Keywords:  ATP hydrolysis; allosteric control; conformational control; half-sites reactivity

Mesh:

Substances:

Year:  2016        PMID: 27698129      PMCID: PMC5056064          DOI: 10.1073/pnas.1613089113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  Electron paramagnetic resonance analysis of different Azotobacter vinelandii nitrogenase MoFe-protein conformations generated during enzyme turnover: evidence for S = 3/2 spin states from reduced MoFe-protein intermediates.

Authors:  K Fisher; W E Newton; D J Lowe
Journal:  Biochemistry       Date:  2001-03-20       Impact factor: 3.162

2.  Mechanism of Molybdenum Nitrogenase.

Authors:  Barbara K. Burgess; David J. Lowe
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

3.  Nitrogenase MoFe-protein at 1.16 A resolution: a central ligand in the FeMo-cofactor.

Authors:  Oliver Einsle; F Akif Tezcan; Susana L A Andrade; Benedikt Schmid; Mika Yoshida; James B Howard; Douglas C Rees
Journal:  Science       Date:  2002-09-06       Impact factor: 47.728

4.  Nitrogenase of Klebsiella pneumoniae. A stopped-flow study of magnesium-adenosine triphosphate-induce electron transfer between the compeonent proteins.

Authors:  R N Thorneley
Journal:  Biochem J       Date:  1975-02       Impact factor: 3.857

5.  Structure of ADP x AIF4(-)-stabilized nitrogenase complex and its implications for signal transduction.

Authors:  H Schindelin; C Kisker; J L Schlessman; J B Howard; D C Rees
Journal:  Nature       Date:  1997-05-22       Impact factor: 49.962

6.  The structural mechanism for half-the-sites reactivity in an enzyme, thymidylate synthase, involves a relay of changes between subunits.

Authors:  A C Anderson; R H O'Neil; W L DeLano; R M Stroud
Journal:  Biochemistry       Date:  1999-10-19       Impact factor: 3.162

7.  MgATP-Bound and nucleotide-free structures of a nitrogenase protein complex between the Leu 127 Delta-Fe-protein and the MoFe-protein.

Authors:  H Chiu; J W Peters; W N Lanzilotta; M J Ryle; L C Seefeldt; J B Howard; D C Rees
Journal:  Biochemistry       Date:  2001-01-23       Impact factor: 3.162

8.  Thermodynamics of nucleotide interactions with the Azotobacter vinelandii nitrogenase iron protein.

Authors:  W N Lanzilotta; V D Parker; L C Seefeldt
Journal:  Biochim Biophys Acta       Date:  1999-01-11

9.  A confirmation of the quench-cryoannealing relaxation protocol for identifying reduction states of freeze-trapped nitrogenase intermediates.

Authors:  Dmitriy Lukoyanov; Zhi-Yong Yang; Simon Duval; Karamatullah Danyal; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  Inorg Chem       Date:  2014-03-18       Impact factor: 5.165

10.  Structural evidence for asymmetrical nucleotide interactions in nitrogenase.

Authors:  F Akif Tezcan; Jens T Kaiser; James B Howard; Douglas C Rees
Journal:  J Am Chem Soc       Date:  2014-12-23       Impact factor: 15.419

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  11 in total

1.  Chokepoints in Mechanical Coupling Associated with Allosteric Proteins: The Pyruvate Kinase Example.

Authors:  Lewis E Johnson; Bojana Ginovska; Aron W Fenton; Simone Raugei
Journal:  Biophys J       Date:  2019-04-02       Impact factor: 4.033

2.  Crystal structure of VnfH, the iron protein component of vanadium nitrogenase.

Authors:  Michael Rohde; Christian Trncik; Daniel Sippel; Stefan Gerhardt; Oliver Einsle
Journal:  J Biol Inorg Chem       Date:  2018-08-23       Impact factor: 3.358

3.  Energy Transduction in Nitrogenase.

Authors:  Lance C Seefeldt; Brian M Hoffman; John W Peters; Simone Raugei; David N Beratan; Edwin Antony; Dennis R Dean
Journal:  Acc Chem Res       Date:  2018-08-10       Impact factor: 22.384

Review 4.  Electron Transfer in Nitrogenase.

Authors:  Hannah L Rutledge; F Akif Tezcan
Journal:  Chem Rev       Date:  2020-01-30       Impact factor: 60.622

5.  Structural evolution of the ancient enzyme, dissimilatory sulfite reductase.

Authors:  Daniel R Colman; Gilles Labesse; Gurla V T Swapna; Johanna Stefanakis; Gaetano T Montelione; Eric S Boyd; Catherine A Royer
Journal:  Proteins       Date:  2022-02-18

6.  Substrate recognition induces sequential electron transfer across subunits in the nitrogenase-like DPOR complex.

Authors:  Elliot I Corless; Brian Bennett; Edwin Antony
Journal:  J Biol Chem       Date:  2020-07-31       Impact factor: 5.157

Review 7.  Control of electron transfer in nitrogenase.

Authors:  Lance C Seefeldt; John W Peters; David N Beratan; Brian Bothner; Shelley D Minteer; Simone Raugei; Brian M Hoffman
Journal:  Curr Opin Chem Biol       Date:  2018-09-08       Impact factor: 8.822

Review 8.  The Spectroscopy of Nitrogenases.

Authors:  Casey Van Stappen; Laure Decamps; George E Cutsail; Ragnar Bjornsson; Justin T Henthorn; James A Birrell; Serena DeBeer
Journal:  Chem Rev       Date:  2020-04-02       Impact factor: 60.622

9.  Nitrogen Reduction to Ammonia on a Biomimetic Mononuclear Iron Centre: Insights into the Nitrogenase Enzyme.

Authors:  Monika A Kaczmarek; Abheek Malhotra; G Alex Balan; Amy Timmins; Sam P de Visser
Journal:  Chemistry       Date:  2017-12-14       Impact factor: 5.236

10.  Optimizing Inorganic Carbon Sequestration and Crop Yield With Wollastonite Soil Amendment in a Microplot Study.

Authors:  Fatima Haque; Rafael M Santos; Yi Wai Chiang
Journal:  Front Plant Sci       Date:  2020-07-03       Impact factor: 5.753

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