Literature DB >> 21939270

Electron transfer within nitrogenase: evidence for a deficit-spending mechanism.

Karamatullah Danyal1, Dennis R Dean, Brian M Hoffman, Lance C Seefeldt.   

Abstract

The reduction of substrates catalyzed by nitrogenase utilizes an electron transfer (ET) chain comprised of three metalloclusters distributed between the two component proteins, designated as the Fe protein and the MoFe protein. The flow of electrons through these three metalloclusters involves ET from the [4Fe-4S] cluster located within the Fe protein to an [8Fe-7S] cluster, called the P cluster, located within the MoFe protein and ET from the P cluster to the active site [7Fe-9S-X-Mo-homocitrate] cluster called FeMo-cofactor, also located within the MoFe protein. The order of these two electron transfer events, the relevant oxidation states of the P-cluster, and the role(s) of ATP, which is obligatory for ET, remain unknown. In the present work, the electron transfer process was examined by stopped-flow spectrophotometry using the wild-type MoFe protein and two variant MoFe proteins, one having the β-188(Ser) residue substituted by cysteine and the other having the β-153(Cys) residue deleted. The data support a "deficit-spending" model of electron transfer where the first event (rate constant 168 s(-1)) is ET from the P cluster to FeMo-cofactor and the second, "backfill", event is fast ET (rate constant >1700 s(-1)) from the Fe protein [4Fe-4S] cluster to the oxidized P cluster. Changes in osmotic pressure reveal that the first electron transfer is conformationally gated, whereas the second is not. The data for the β-153(Cys) deletion MoFe protein variant provide an argument against an alternative two-step "hopping" ET model that reverses the two ET steps, with the Fe protein first transferring an electron to the P cluster, which in turn transfers an electron to FeMo-cofactor. The roles for ATP binding and hydrolysis in controlling the ET reactions were examined using βγ-methylene-ATP as a prehydrolysis ATP analogue and ADP + AlF(4)(-) as a posthydrolysis analogue (a mimic of ADP + P(i)).

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Year:  2011        PMID: 21939270      PMCID: PMC3202676          DOI: 10.1021/bi201003a

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  38 in total

1.  Mechanism of Molybdenum Nitrogenase.

Authors:  Barbara K. Burgess; David J. Lowe
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Temperature effects on the MgATP-induced electron transfer between the nitrogenase proteins from Azotobacter vinelandii.

Authors:  R E Mensink; H Haaker
Journal:  Eur J Biochem       Date:  1992-09-01

3.  Electron transfer and electronic conduction through an intervening medium.

Authors:  Peter P Edwards; Harry B Gray; Matthew T J Lodge; Robert J P Williams
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

4.  An all-ferrous state of the Fe protein of nitrogenase. Interaction with nucleotides and electron transfer to the MoFe protein.

Authors:  H C Angove; S J Yoo; E Münck; B K Burgess
Journal:  J Biol Chem       Date:  1998-10-09       Impact factor: 5.157

5.  Nitrogenase of Klebsiella pneumoniae. A stopped-flow study of magnesium-adenosine triphosphate-induce electron transfer between the compeonent proteins.

Authors:  R N Thorneley
Journal:  Biochem J       Date:  1975-02       Impact factor: 3.857

6.  Structure of ADP x AIF4(-)-stabilized nitrogenase complex and its implications for signal transduction.

Authors:  H Schindelin; C Kisker; J L Schlessman; J B Howard; D C Rees
Journal:  Nature       Date:  1997-05-22       Impact factor: 49.962

7.  Nitrogenase complexes: multiple docking sites for a nucleotide switch protein.

Authors:  F Akif Tezcan; Jens T Kaiser; Debarshi Mustafi; Mika Y Walton; James B Howard; Douglas C Rees
Journal:  Science       Date:  2005-08-26       Impact factor: 47.728

8.  MgATP-Bound and nucleotide-free structures of a nitrogenase protein complex between the Leu 127 Delta-Fe-protein and the MoFe-protein.

Authors:  H Chiu; J W Peters; W N Lanzilotta; M J Ryle; L C Seefeldt; J B Howard; D C Rees
Journal:  Biochemistry       Date:  2001-01-23       Impact factor: 3.162

9.  Crystallographic structure of the nitrogenase iron protein from Azotobacter vinelandii.

Authors:  M M Georgiadis; H Komiya; P Chakrabarti; D Woo; J J Kornuc; D C Rees
Journal:  Science       Date:  1992-09-18       Impact factor: 47.728

10.  Substrate interaction at an iron-sulfur face of the FeMo-cofactor during nitrogenase catalysis.

Authors:  Brett M Barney; Robert Y Igarashi; Patricia C Dos Santos; Dennis R Dean; Lance C Seefeldt
Journal:  J Biol Chem       Date:  2004-10-01       Impact factor: 5.157

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  34 in total

1.  Electron transfer precedes ATP hydrolysis during nitrogenase catalysis.

Authors:  Simon Duval; Karamatullah Danyal; Sudipta Shaw; Anna K Lytle; Dennis R Dean; Brian M Hoffman; Edwin Antony; Lance C Seefeldt
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-23       Impact factor: 11.205

2.  Crystal structure of VnfH, the iron protein component of vanadium nitrogenase.

Authors:  Michael Rohde; Christian Trncik; Daniel Sippel; Stefan Gerhardt; Oliver Einsle
Journal:  J Biol Inorg Chem       Date:  2018-08-23       Impact factor: 3.358

3.  Energy Transduction in Nitrogenase.

Authors:  Lance C Seefeldt; Brian M Hoffman; John W Peters; Simone Raugei; David N Beratan; Edwin Antony; Dennis R Dean
Journal:  Acc Chem Res       Date:  2018-08-10       Impact factor: 22.384

4.  Tyrosine-Coordinated P-Cluster in G. diazotrophicus Nitrogenase: Evidence for the Importance of O-Based Ligands in Conformationally Gated Electron Transfer.

Authors:  Cedric P Owens; Faith E H Katz; Cole H Carter; Victoria F Oswald; F Akif Tezcan
Journal:  J Am Chem Soc       Date:  2016-08-08       Impact factor: 15.419

5.  Temperature invariance of the nitrogenase electron transfer mechanism.

Authors:  Diana Mayweather; Karamatullah Danyal; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  Biochemistry       Date:  2012-10-10       Impact factor: 3.162

6.  Unraveling the interactions of the physiological reductant flavodoxin with the different conformations of the Fe protein in the nitrogenase cycle.

Authors:  Natasha Pence; Monika Tokmina-Lukaszewska; Zhi-Yong Yang; Rhesa N Ledbetter; Lance C Seefeldt; Brian Bothner; John W Peters
Journal:  J Biol Chem       Date:  2017-08-07       Impact factor: 5.157

7.  Substrate recognition induces sequential electron transfer across subunits in the nitrogenase-like DPOR complex.

Authors:  Elliot I Corless; Brian Bennett; Edwin Antony
Journal:  J Biol Chem       Date:  2020-07-31       Impact factor: 5.157

8.  Structural characterization of the P1+ intermediate state of the P-cluster of nitrogenase.

Authors:  Stephen M Keable; Oleg A Zadvornyy; Lewis E Johnson; Bojana Ginovska; Andrew J Rasmussen; Karamatullah Danyal; Brian J Eilers; Gregory A Prussia; Axl X LeVan; Simone Raugei; Lance C Seefeldt; John W Peters
Journal:  J Biol Chem       Date:  2018-05-02       Impact factor: 5.157

9.  Negative cooperativity in the nitrogenase Fe protein electron delivery cycle.

Authors:  Karamatullah Danyal; Sudipta Shaw; Taylor R Page; Simon Duval; Masaki Horitani; Amy R Marts; Dmitriy Lukoyanov; Dennis R Dean; Simone Raugei; Brian M Hoffman; Lance C Seefeldt; Edwin Antony
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-04       Impact factor: 11.205

Review 10.  Nitrogenase reduction of carbon-containing compounds.

Authors:  Lance C Seefeldt; Zhi-Yong Yang; Simon Duval; Dennis R Dean
Journal:  Biochim Biophys Acta       Date:  2013-04-16
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