Literature DB >> 20397697

Solvation response along the reaction coordinate in the active site of ketosteroid isomerase.

William Childs1, Steven G Boxer.   

Abstract

A light-activated reaction analog has been developed to mimic the catalytic reaction cycle of Delta(5)-3-ketosteroid isomerase to probe the functionally relevant protein solvation response to the catalytic charge transfer. Delta(5)-3-ketosteroid isomerase from Pseudomonas putida catalyzes a C-H bond cleavage and formation through an enolate intermediate. Conversion of the ketone substrate to the enolate intermediate is simulated by a photoacid bound to the active site oxyanion hole. In the ground state, the photoacid electrostatically resembles the enolate intermediate while the low pK(a) excited state resembles the ketone starting material. Time-resolved fluorescence experiments with photoacids coumarin 183 and equilenin show the active site of Delta(5)-3-ketosteroid isomerase to be largely unperturbed by the light-activated reaction. The small solvation response for the photoacid at the active site as compared with a simple solvent suggests the active site does not significantly change its electrostatic environment during the catalytic cycle. Instead, the reaction takes place in an electrostatically preorganized environment.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20397697      PMCID: PMC2871671          DOI: 10.1021/ja1007849

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  26 in total

Review 1.  Enzymatic mechanisms for catalysis of enolization: ketosteroid isomerase.

Authors:  Ralph M Pollack
Journal:  Bioorg Chem       Date:  2004-10       Impact factor: 5.275

2.  Evolution of new nonantibody proteins via iterative somatic hypermutation.

Authors:  Lei Wang; W Coyt Jackson; Paul A Steinbach; Roger Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-19       Impact factor: 11.205

Review 3.  Electrostatic basis for enzyme catalysis.

Authors:  Arieh Warshel; Pankaz K Sharma; Mitsunori Kato; Yun Xiang; Hanbin Liu; Mats H M Olsson
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

Review 4.  Relating protein motion to catalysis.

Authors:  Sharon Hammes-Schiffer; Stephen J Benkovic
Journal:  Annu Rev Biochem       Date:  2006       Impact factor: 23.643

5.  Do ligand binding and solvent exclusion alter the electrostatic character within the oxyanion hole of an enzymatic active site?

Authors:  Paul A Sigala; Aaron T Fafarman; Patrick E Bogard; Steven G Boxer; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2007-09-14       Impact factor: 15.419

Review 6.  Electrostatic origin of the catalytic power of enzymes and the role of preorganized active sites.

Authors:  A Warshel
Journal:  J Biol Chem       Date:  1998-10-16       Impact factor: 5.157

7.  Dispersed polaron simulations of electron transfer in photosynthetic reaction centers.

Authors:  A Warshel; Z T Chu; W W Parson
Journal:  Science       Date:  1989-10-06       Impact factor: 47.728

8.  Energetics of enzyme catalysis.

Authors:  A Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  1978-11       Impact factor: 11.205

9.  Kinetic and ultraviolet spectroscopic studies of active-site mutants of delta 5-3-ketosteroid isomerase.

Authors:  A Kuliopulos; A S Mildvan; D Shortle; P Talalay
Journal:  Biochemistry       Date:  1989-01-10       Impact factor: 3.162

10.  Hybrid quantum/classical molecular dynamics simulations of the proton transfer reactions catalyzed by ketosteroid isomerase: analysis of hydrogen bonding, conformational motions, and electrostatics.

Authors:  Dhruva K Chakravorty; Alexander V Soudackov; Sharon Hammes-Schiffer
Journal:  Biochemistry       Date:  2009-11-10       Impact factor: 3.162

View more
  8 in total

1.  Direct measurement of the protein response to an electrostatic perturbation that mimics the catalytic cycle in ketosteroid isomerase.

Authors:  Santosh Kumar Jha; Minbiao Ji; Kelly J Gaffney; Steven G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-26       Impact factor: 11.205

2.  Site-specific measurement of water dynamics in the substrate pocket of ketosteroid isomerase using time-resolved vibrational spectroscopy.

Authors:  Santosh Kumar Jha; Minbiao Ji; Kelly J Gaffney; Steven G Boxer
Journal:  J Phys Chem B       Date:  2012-09-07       Impact factor: 2.991

3.  Quantitative dissection of hydrogen bond-mediated proton transfer in the ketosteroid isomerase active site.

Authors:  Paul A Sigala; Aaron T Fafarman; Jason P Schwans; Stephen D Fried; Timothy D Fenn; Jose M M Caaveiro; Brandon Pybus; Dagmar Ringe; Gregory A Petsko; Steven G Boxer; Daniel Herschlag
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

4.  Extreme electric fields power catalysis in the active site of ketosteroid isomerase.

Authors:  Stephen D Fried; Sayan Bagchi; Steven G Boxer
Journal:  Science       Date:  2014-12-19       Impact factor: 47.728

Review 5.  Catalytic efficiency of enzymes: a theoretical analysis.

Authors:  Sharon Hammes-Schiffer
Journal:  Biochemistry       Date:  2012-12-20       Impact factor: 3.162

6.  Calculation of vibrational shifts of nitrile probes in the active site of ketosteroid isomerase upon ligand binding.

Authors:  Joshua P Layfield; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2012-12-31       Impact factor: 15.419

7.  Picosecond-resolved fluorescent probes at functionally distinct tryptophans within a thermophilic alcohol dehydrogenase: relationship of temperature-dependent changes in fluorescence to catalysis.

Authors:  Corey W Meadows; Ryan Ou; Judith P Klinman
Journal:  J Phys Chem B       Date:  2014-06-03       Impact factor: 2.991

8.  Quantified electrostatic preorganization in enzymes using the geometry of the electron charge density.

Authors:  Amanda Morgenstern; Matthew Jaszai; Mark E Eberhart; Anastassia N Alexandrova
Journal:  Chem Sci       Date:  2017-04-24       Impact factor: 9.825

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.