Literature DB >> 20385783

Stb3 plays a role in the glucose-induced transition from quiescence to growth in Saccharomyces cerevisiae.

Dritan Liko1, Michael K Conway, Douglas S Grunwald, Warren Heideman.   

Abstract

Addition of glucose to quiescent Saccharomyces cerevisiae cells causes the immediate induction of approximately 1000 genes. These genes include ribosomal proteins (RP) and non-RP genes needed for ribosome production and other growth processes. RRPE sequence elements are commonly found 5' of non-RP growth gene ORFs, and Stb3 has recently been identified as an RRPE binding protein. Stb3 overexpression (Stb3OE) produces a slow growth phenotype that is associated with reduced expression of non-RP genes and a drop in the rate of amino acid incorporation. Genes affected by Stb3 are associated with a TGAAAAA motif. Stb3 is restricted to the nucleus in quiescent cells and is immediately released into the cytoplasm after glucose repletion. The Stb3OE slow growth phenotype is reversed by loss of Hos2 histone deactylase activity, consistent with the idea that repression involves histone deacetylation. SCH9 overexpression or PPH22 deletion, mutations that activate target of rapamycin (Tor) nutrient sensing pathways, also reverse the Stb3OE phenotype. Inhibition of Tor signaling makes the phenotype more severe and restricts Stb3 to the nucleus. The results support a model in which Stb3 is one of the components that repress a large set of growth genes as nutrients are depleted. This repression is ended by glucose.

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Year:  2010        PMID: 20385783      PMCID: PMC2907202          DOI: 10.1534/genetics.110.116665

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  62 in total

1.  TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1.

Authors:  Dietmar E Martin; Alexandre Soulard; Michael N Hall
Journal:  Cell       Date:  2004-12-29       Impact factor: 41.582

2.  Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.

Authors:  Marijana Radonjic; Jean-Christophe Andrau; Philip Lijnzaad; Patrick Kemmeren; Thessa T J P Kockelkorn; Dik van Leenen; Nynke L van Berkum; Frank C P Holstege
Journal:  Mol Cell       Date:  2005-04-15       Impact factor: 17.970

3.  Stb3 binds to ribosomal RNA processing element motifs that control transcriptional responses to growth in Saccharomyces cerevisiae.

Authors:  Dritan Liko; Matthew G Slattery; Warren Heideman
Journal:  J Biol Chem       Date:  2007-07-06       Impact factor: 5.157

4.  Sfp1 interaction with TORC1 and Mrs6 reveals feedback regulation on TOR signaling.

Authors:  Harri Lempiäinen; Aino Uotila; Jörg Urban; Ilse Dohnal; Gustav Ammerer; Robbie Loewith; David Shore
Journal:  Mol Cell       Date:  2009-03-27       Impact factor: 17.970

5.  Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis.

Authors:  Alexandre Huber; Bernd Bodenmiller; Aino Uotila; Michael Stahl; Stefanie Wanka; Bertran Gerrits; Ruedi Aebersold; Robbie Loewith
Journal:  Genes Dev       Date:  2009-08-15       Impact factor: 11.361

6.  Requirement of Hos2 histone deacetylase for gene activity in yeast.

Authors:  Amy Wang; Siavash K Kurdistani; Michael Grunstein
Journal:  Science       Date:  2002-11-15       Impact factor: 47.728

7.  Regulation of the Cln3-Cdc28 kinase by cAMP in Saccharomyces cerevisiae.

Authors:  D D Hall; D D Markwardt; F Parviz; W Heideman
Journal:  EMBO J       Date:  1998-08-03       Impact factor: 11.598

8.  Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis.

Authors:  Chiara Cipollina; Joost van den Brink; Pascale Daran-Lapujade; Jack T Pronk; Danilo Porro; Johannes H de Winde
Journal:  Microbiology (Reading)       Date:  2008-06       Impact factor: 2.777

9.  Rpd3p relocation mediates a transcriptional response to rapamycin in yeast.

Authors:  Emily L Humphrey; Alykhan F Shamji; Bradley E Bernstein; Stuart L Schreiber
Journal:  Chem Biol       Date:  2004-03

10.  Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases.

Authors:  Daniel Robyr; Yuko Suka; Ioannis Xenarios; Siavash K Kurdistani; Amy Wang; Noriyuki Suka; Michael Grunstein
Journal:  Cell       Date:  2002-05-17       Impact factor: 41.582

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  17 in total

1.  Promoter architectures in the yeast ribosomal expression program.

Authors:  Maria Cristina Bosio; Rodolfo Negri; Giorgio Dieci
Journal:  Transcription       Date:  2011-03

2.  Transcriptional control of yeast ribosome biogenesis: A multifaceted role for general regulatory factors.

Authors:  Maria Cristina Bosio; Beatrice Fermi; Giorgio Dieci
Journal:  Transcription       Date:  2017-04-27

3.  Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L.

Authors:  Alexandre Huber; Sarah L French; Hille Tekotte; Seda Yerlikaya; Michael Stahl; Mariya P Perepelkina; Mike Tyers; Jacques Rougemont; Ann L Beyer; Robbie Loewith
Journal:  EMBO J       Date:  2011-07-05       Impact factor: 11.598

Review 4.  Nutrient sensing and signaling in the yeast Saccharomyces cerevisiae.

Authors:  Michaela Conrad; Joep Schothorst; Harish Nag Kankipati; Griet Van Zeebroeck; Marta Rubio-Texeira; Johan M Thevelein
Journal:  FEMS Microbiol Rev       Date:  2014-03-03       Impact factor: 16.408

5.  Adjacent gene pairing plays a role in the coordinated expression of ribosome biogenesis genes MPP10 and YJR003C in Saccharomyces cerevisiae.

Authors:  James T Arnone; Michael A McAlear
Journal:  Eukaryot Cell       Date:  2010-11-29

6.  Dynamic changes in nucleosome occupancy are not predictive of gene expression dynamics but are linked to transcription and chromatin regulators.

Authors:  Dana J Huebert; Pei-Fen Kuan; Sündüz Keleş; Audrey P Gasch
Journal:  Mol Cell Biol       Date:  2012-02-21       Impact factor: 4.272

7.  Integration of multiple nutrient cues and regulation of lifespan by ribosomal transcription factor Ifh1.

Authors:  Ling Cai; Mark A McCormick; Brian K Kennedy; Benjamin P Tu
Journal:  Cell Rep       Date:  2013-09-12       Impact factor: 9.423

8.  Transcriptional responses to glucose in Saccharomyces cerevisiae strains lacking a functional protein kinase A.

Authors:  Daniela Livas; Marinka Jh Almering; Jean-Marc Daran; Jack T Pronk; Juana M Gancedo
Journal:  BMC Genomics       Date:  2011-08-09       Impact factor: 3.969

Review 9.  Target of rapamycin (TOR) in nutrient signaling and growth control.

Authors:  Robbie Loewith; Michael N Hall
Journal:  Genetics       Date:  2011-12       Impact factor: 4.562

Review 10.  Quiescence: early evolutionary origins and universality do not imply uniformity.

Authors:  Patrick H O'Farrell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-12-27       Impact factor: 6.237

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