Literature DB >> 24035395

Integration of multiple nutrient cues and regulation of lifespan by ribosomal transcription factor Ifh1.

Ling Cai1, Mark A McCormick, Brian K Kennedy, Benjamin P Tu.   

Abstract

Ribosome biogenesis requires an enormous commitment of energy and resources in growing cells. In budding yeast, the transcriptional coactivator Ifh1p is an essential regulator of ribosomal protein (RP) gene transcription. Here, we report that Ifh1p is dynamically acetylated and phosphorylated as a function of the growth state of cells. Ifh1p is acetylated at numerous sites in its N-terminal region by Gcn5p and deacetylated by NAD(+)-dependent deacetylases of the sirtuin family. Acetylation of Ifh1p is responsive to intracellular acetyl-CoA levels and serves to regulate the stability of Ifh1p. The phosphorylation of Ifh1p is mediated by protein kinase A and is dependent on TORC1 signaling. Thus, multiple nutrient-sensing mechanisms converge on Ifh1p. However, instead of modulating overall rates of RP gene transcription or cell growth, the nutrient-responsive phosphorylation of Ifh1p plays a more prominent role in the regulation of cellular replicative lifespan.
Copyright © 2013 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 24035395      PMCID: PMC3792855          DOI: 10.1016/j.celrep.2013.08.016

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  29 in total

1.  Chromatin immunoprecipitation to study protein-DNA interactions in budding yeast.

Authors:  Elena Ezhkova; William P Tansey
Journal:  Methods Mol Biol       Date:  2006

2.  Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes.

Authors:  Benjamin P Tu; Andrzej Kudlicki; Maga Rowicka; Steven L McKnight
Journal:  Science       Date:  2005-10-27       Impact factor: 47.728

3.  Potential interface between ribosomal protein production and pre-rRNA processing.

Authors:  Dipayan Rudra; Jaideep Mallick; Yu Zhao; Jonathan R Warner
Journal:  Mol Cell Biol       Date:  2007-04-23       Impact factor: 4.272

4.  Cyclic changes in metabolic state during the life of a yeast cell.

Authors:  Benjamin P Tu; Rachel E Mohler; Jessica C Liu; Kenneth M Dombek; Elton T Young; Robert E Synovec; Steven L McKnight
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-16       Impact factor: 11.205

5.  Regulation of yeast replicative life span by TOR and Sch9 in response to nutrients.

Authors:  Matt Kaeberlein; R Wilson Powers; Kristan K Steffen; Eric A Westman; Di Hu; Nick Dang; Emily O Kerr; Kathryn T Kirkland; Stanley Fields; Brian K Kennedy
Journal:  Science       Date:  2005-11-18       Impact factor: 47.728

6.  Central role of Ifh1p-Fhl1p interaction in the synthesis of yeast ribosomal proteins.

Authors:  Dipayan Rudra; Yu Zhao; Jonathan R Warner
Journal:  EMBO J       Date:  2005-02-03       Impact factor: 11.598

7.  Yeast life span extension by depletion of 60s ribosomal subunits is mediated by Gcn4.

Authors:  Kristan K Steffen; Vivian L MacKay; Emily O Kerr; Mitsuhiro Tsuchiya; Di Hu; Lindsay A Fox; Nick Dang; Elijah D Johnston; Jonathan A Oakes; Bie N Tchao; Diana N Pak; Stanley Fields; Brian K Kennedy; Matt Kaeberlein
Journal:  Cell       Date:  2008-04-18       Impact factor: 41.582

Review 8.  How Saccharomyces responds to nutrients.

Authors:  Shadia Zaman; Soyeon Im Lippman; Xin Zhao; James R Broach
Journal:  Annu Rev Genet       Date:  2008       Impact factor: 16.830

9.  Glucose regulates transcription in yeast through a network of signaling pathways.

Authors:  Shadia Zaman; Soyeon I Lippman; Lisa Schneper; Noam Slonim; James R Broach
Journal:  Mol Syst Biol       Date:  2009-02-17       Impact factor: 11.429

10.  An integrated software system for analyzing ChIP-chip and ChIP-seq data.

Authors:  Hongkai Ji; Hui Jiang; Wenxiu Ma; David S Johnson; Richard M Myers; Wing H Wong
Journal:  Nat Biotechnol       Date:  2008-11-02       Impact factor: 54.908

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  18 in total

1.  A synthetic non-histone substrate to study substrate targeting by the Gcn5 HAT and sirtuin HDACs.

Authors:  Anthony Rössl; Alix Denoncourt; Mong-Shang Lin; Michael Downey
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

2.  The SAGA histone deubiquitinase module controls yeast replicative lifespan via Sir2 interaction.

Authors:  Mark A McCormick; Amanda G Mason; Stephan J Guyenet; Weiwei Dang; Renee M Garza; Marc K Ting; Rick M Moller; Shelley L Berger; Matt Kaeberlein; Lorraine Pillus; Albert R La Spada; Brian K Kennedy
Journal:  Cell Rep       Date:  2014-07-18       Impact factor: 9.423

3.  Acetylome profiling reveals overlap in the regulation of diverse processes by sirtuins, gcn5, and esa1.

Authors:  Michael Downey; Jeffrey R Johnson; Norman E Davey; Billy W Newton; Tasha L Johnson; Shastyn Galaang; Charles A Seller; Nevan Krogan; David P Toczyski
Journal:  Mol Cell Proteomics       Date:  2014-11-07       Impact factor: 5.911

Review 4.  Protein acetylation and acetyl coenzyme a metabolism in budding yeast.

Authors:  Luciano Galdieri; Tiantian Zhang; Daniella Rogerson; Rron Lleshi; Ales Vancura
Journal:  Eukaryot Cell       Date:  2014-10-17

5.  Glucose starvation induces a switch in the histone acetylome for activation of gluconeogenic and fat metabolism genes.

Authors:  Wen-Chuan Hsieh; Benjamin M Sutter; Holly Ruess; Spencer D Barnes; Venkat S Malladi; Benjamin P Tu
Journal:  Mol Cell       Date:  2022-01-06       Impact factor: 17.970

Review 6.  Nuclear mRNA Export and Aging.

Authors:  Hyun-Sun Park; Jongbok Lee; Hyun-Shik Lee; Seong Hoon Ahn; Hong-Yeoul Ryu
Journal:  Int J Mol Sci       Date:  2022-05-13       Impact factor: 6.208

7.  Sus1 maintains a normal lifespan through regulation of TREX-2 complex-mediated mRNA export.

Authors:  Suji Lim; Yan Liu; Byung-Ho Rhie; Chun Kim; Hong-Yeoul Ryu; Seong Hoon Ahn
Journal:  Aging (Albany NY)       Date:  2022-06-29       Impact factor: 5.955

Review 8.  Acetyl-CoA and the regulation of metabolism: mechanisms and consequences.

Authors:  Lei Shi; Benjamin P Tu
Journal:  Curr Opin Cell Biol       Date:  2015-02-20       Impact factor: 8.382

9.  Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes.

Authors:  Pierre Chymkowitch; Aurélie P Nguéa; Håvard Aanes; Christian J Koehler; Bernd Thiede; Susanne Lorenz; Leonardo A Meza-Zepeda; Arne Klungland; Jorrit M Enserink
Journal:  Genome Res       Date:  2015-03-23       Impact factor: 9.043

10.  Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription.

Authors:  Britta Knight; Slawomir Kubik; Bhaswar Ghosh; Maria Jessica Bruzzone; Marcel Geertz; Victoria Martin; Nicolas Dénervaud; Philippe Jacquet; Burak Ozkan; Jacques Rougemont; Sebastian J Maerkl; Félix Naef; David Shore
Journal:  Genes Dev       Date:  2014-08-01       Impact factor: 11.361

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