Literature DB >> 28448767

Transcriptional control of yeast ribosome biogenesis: A multifaceted role for general regulatory factors.

Maria Cristina Bosio1, Beatrice Fermi1, Giorgio Dieci1.   

Abstract

In Saccharomyces cerevisiae, a group of more than 200 co-regulated genes (Ribi genes) is involved in ribosome biogenesis. This regulon has recently been shown to rely on a small set of transcriptional regulators (mainly Abf1, but also Reb1, Tbf1 and Rap1) previously referred to as general regulatory factors (GRFs) because of their widespread binding and action at many promoters and other specialized genomic regions. Intriguingly, Abf1 binding to Ribi genes is differentially modulated in response to distinct nutrition signaling pathways. Such a dynamic promoter association has the potential to orchestrate both activation and repression of Ribi genes in synergy with neighboring regulatory sites and through the functional interplay of histone acetyltransferases and deacetylases.

Entities:  

Keywords:  Abf1; Rap1; Reb1; Ribi genes; Rpd3 histone deacetylase; Tbf1; histone acetylation

Mesh:

Substances:

Year:  2017        PMID: 28448767      PMCID: PMC5574525          DOI: 10.1080/21541264.2017.1317378

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  42 in total

1.  Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae.

Authors:  J D Hughes; P W Estep; S Tavazoie; G M Church
Journal:  J Mol Biol       Date:  2000-03-10       Impact factor: 5.469

2.  A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae.

Authors:  Kathryn L Huisinga; B Franklin Pugh
Journal:  Mol Cell       Date:  2004-02-27       Impact factor: 17.970

3.  Stb3 binds to ribosomal RNA processing element motifs that control transcriptional responses to growth in Saccharomyces cerevisiae.

Authors:  Dritan Liko; Matthew G Slattery; Warren Heideman
Journal:  J Biol Chem       Date:  2007-07-06       Impact factor: 5.157

Review 4.  Nutritional control of growth and development in yeast.

Authors:  James R Broach
Journal:  Genetics       Date:  2012-09       Impact factor: 4.562

5.  Dynamic phosphoproteomics reveals TORC1-dependent regulation of yeast nucleotide and amino acid biosynthesis.

Authors:  Ana Paula Oliveira; Christina Ludwig; Mattia Zampieri; Hendrik Weisser; Ruedi Aebersold; Uwe Sauer
Journal:  Sci Signal       Date:  2015-04-28       Impact factor: 8.192

6.  A Molecular Titration System Coordinates Ribosomal Protein Gene Transcription with Ribosomal RNA Synthesis.

Authors:  Benjamin Albert; Britta Knight; Jason Merwin; Victoria Martin; Diana Ottoz; Yvonne Gloor; Maria Jessica Bruzzone; Adam Rudner; David Shore
Journal:  Mol Cell       Date:  2016-11-03       Impact factor: 17.970

7.  Tbf1 and Vid22 promote resection and non-homologous end joining of DNA double-strand break ends.

Authors:  Diego Bonetti; Savani Anbalagan; Giovanna Lucchini; Michela Clerici; Maria Pia Longhese
Journal:  EMBO J       Date:  2012-12-07       Impact factor: 11.598

8.  A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size.

Authors:  Paul Jorgensen; Ivan Rupes; Jeffrey R Sharom; Lisa Schneper; James R Broach; Mike Tyers
Journal:  Genes Dev       Date:  2004-10-01       Impact factor: 11.361

9.  Rpd3p relocation mediates a transcriptional response to rapamycin in yeast.

Authors:  Emily L Humphrey; Alykhan F Shamji; Bradley E Bernstein; Stuart L Schreiber
Journal:  Chem Biol       Date:  2004-03

10.  Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription.

Authors:  Britta Knight; Slawomir Kubik; Bhaswar Ghosh; Maria Jessica Bruzzone; Marcel Geertz; Victoria Martin; Nicolas Dénervaud; Philippe Jacquet; Burak Ozkan; Jacques Rougemont; Sebastian J Maerkl; Félix Naef; David Shore
Journal:  Genes Dev       Date:  2014-08-01       Impact factor: 11.361

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  7 in total

1.  Functionally Related Genes Cluster into Genomic Regions That Coordinate Transcription at a Distance in Saccharomyces cerevisiae.

Authors:  Alanna Cera; Maria K Holganza; Ahmad Abu Hardan; Irvin Gamarra; Reem S Eldabagh; Megan Deschaine; Sarah Elkamhawy; Exequiel M Sisso; Jonathan J Foley; James T Arnone
Journal:  mSphere       Date:  2019-03-13       Impact factor: 4.389

2.  Global translation inhibition yields condition-dependent de-repression of ribosome biogenesis mRNAs.

Authors:  Ze Cheng; Gloria Ann Brar
Journal:  Nucleic Acids Res       Date:  2019-06-04       Impact factor: 16.971

3.  Pol5 is an essential ribosome biogenesis factor required for 60S ribosomal subunit maturation in Saccharomyces cerevisiae.

Authors:  Ana Ramos-Sáenz; Daniel González-Álvarez; Olga Rodríguez-Galán; Alfonso Rodríguez-Gil; Sonia G Gaspar; Eduardo Villalobo; Mercedes Dosil; Jesús de la Cruz
Journal:  RNA       Date:  2019-08-14       Impact factor: 4.942

Review 4.  snoRNPs: Functions in Ribosome Biogenesis.

Authors:  Sandeep Ojha; Sulochan Malla; Shawn M Lyons
Journal:  Biomolecules       Date:  2020-05-18

Review 5.  Eukaryotic RNA Polymerases: The Many Ways to Transcribe a Gene.

Authors:  Marina Barba-Aliaga; Paula Alepuz; José E Pérez-Ortín
Journal:  Front Mol Biosci       Date:  2021-04-21

6.  Integrating Rio1 activities discloses its nutrient-activated network in Saccharomyces cerevisiae.

Authors:  Maria G Iacovella; Michael Bremang; Omer Basha; Luciano Giacò; Walter Carotenuto; Cristina Golfieri; Barnabas Szakal; Marianna Dal Maschio; Valentina Infantino; Galina V Beznoussenko; Chinnu R Joseph; Clara Visintin; Alexander A Mironov; Rosella Visintin; Dana Branzei; Sébastien Ferreira-Cerca; Esti Yeger-Lotem; Peter De Wulf
Journal:  Nucleic Acids Res       Date:  2018-09-06       Impact factor: 16.971

Review 7.  Transcribe this way: Rap1 confers promoter directionality by repressing divergent transcription.

Authors:  Andrew C K Wu; Folkert J Van Werven
Journal:  Transcription       Date:  2019-05-05
  7 in total

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