Literature DB >> 20351255

Residues in the central beta-hairpin of the DNA helicase of bacteriophage T7 are important in DNA unwinding.

Ajit K Satapathy1, Anna B Kochaniak, Sourav Mukherjee, Donald J Crampton, Antoine van Oijen, Charles C Richardson.   

Abstract

The ring-shaped helicase of bacteriophage T7 (gp4), the product of gene 4, has basic beta-hairpin loops lining its central core where they are postulated to be the major sites of DNA interaction. We have altered multiple residues within the beta-hairpin loop to determine their role during dTTPase-driven DNA unwinding. Residues His-465, Leu-466, and Asn-468 are essential for both DNA unwinding and DNA synthesis mediated by T7 DNA polymerase during leading-strand DNA synthesis. Gp4-K467A, gp4-K471A, and gp4-K473A form fewer hexamers than heptamers compared to wild-type helicase and alone are deficient in DNA unwinding. However, they complement for the growth of T7 bacteriophage lacking gene 4. Single-molecule studies show that these three altered helicases support rates of leading-strand DNA synthesis comparable to that observed with wild-type gp4. Gp4-K467A, devoid of unwinding activity alone, supports leading-strand synthesis in the presence of T7 DNA polymerase. We propose that DNA polymerase limits the backward movement of the helicase during unwinding as well as assisting the forward movement necessary for strand separation.

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Year:  2010        PMID: 20351255      PMCID: PMC2872414          DOI: 10.1073/pnas.1002734107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Crystal structure of the helicase domain from the replicative helicase-primase of bacteriophage T7.

Authors:  M R Sawaya; S Guo; S Tabor; C C Richardson; T Ellenberger
Journal:  Cell       Date:  1999-10-15       Impact factor: 41.582

2.  A ring-opening mechanism for DNA binding in the central channel of the T7 helicase-primase protein.

Authors:  P Ahnert; K M Picha; S S Patel
Journal:  EMBO J       Date:  2000-07-03       Impact factor: 11.598

Review 3.  On helicases and other motor proteins.

Authors:  Eric J Enemark; Leemor Joshua-Tor
Journal:  Curr Opin Struct Biol       Date:  2008-03-10       Impact factor: 6.809

Review 4.  Structure and mechanism of helicases and nucleic acid translocases.

Authors:  Martin R Singleton; Mark S Dillingham; Dale B Wigley
Journal:  Annu Rev Biochem       Date:  2007       Impact factor: 23.643

5.  Dynamic DNA helicase-DNA polymerase interactions assure processive replication fork movement.

Authors:  Samir M Hamdan; Donald E Johnson; Nathan A Tanner; Jong-Bong Lee; Udi Qimron; Stanley Tabor; Antoine M van Oijen; Charles C Richardson
Journal:  Mol Cell       Date:  2007-08-17       Impact factor: 17.970

6.  The structure of a DnaB-family replicative helicase and its interactions with primase.

Authors:  Ganggang Wang; Michael G Klein; Etienne Tokonzaba; Yi Zhang; Lauren G Holden; Xiaojiang S Chen
Journal:  Nat Struct Mol Biol       Date:  2007-12-23       Impact factor: 15.369

Review 7.  Motors, switches, and contacts in the replisome.

Authors:  Samir M Hamdan; Charles C Richardson
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

8.  Communication between subunits critical to DNA binding by hexameric helicase of bacteriophage T7.

Authors:  Seung-Joo Lee; Udi Qimron; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-23       Impact factor: 11.205

9.  Promiscuous usage of nucleotides by the DNA helicase of bacteriophage T7: determinants of nucleotide specificity.

Authors:  Ajit K Satapathy; Donald J Crampton; Benjamin B Beauchamp; Charles C Richardson
Journal:  J Biol Chem       Date:  2009-03-17       Impact factor: 5.157

10.  Model for T-antigen-dependent melting of the simian virus 40 core origin based on studies of the interaction of the beta-hairpin with DNA.

Authors:  Anuradha Kumar; Gretchen Meinke; Danielle K Reese; Stephanie Moine; Paul J Phelan; Amélie Fradet-Turcotte; Jacques Archambault; Andrew Bohm; Peter A Bullock
Journal:  J Virol       Date:  2007-02-07       Impact factor: 5.103

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  9 in total

1.  Disease variants of the human mitochondrial DNA helicase encoded by C10orf2 differentially alter protein stability, nucleotide hydrolysis, and helicase activity.

Authors:  Matthew J Longley; Margaret M Humble; Farida S Sharief; William C Copeland
Journal:  J Biol Chem       Date:  2010-07-20       Impact factor: 5.157

2.  Bypass of a nick by the replisome of bacteriophage T7.

Authors:  Bin Zhu; Seung-Joo Lee; Charles C Richardson
Journal:  J Biol Chem       Date:  2011-06-23       Impact factor: 5.157

3.  Coupling dTTP hydrolysis with DNA unwinding by the DNA helicase of bacteriophage T7.

Authors:  Ajit K Satapathy; Arkadiusz W Kulczyk; Sharmistha Ghosh; Antoine M van Oijen; Charles C Richardson
Journal:  J Biol Chem       Date:  2011-08-12       Impact factor: 5.157

4.  Heterohexamer of 56- and 63-kDa Gene 4 Helicase-Primase of Bacteriophage T7 in DNA Replication.

Authors:  Huidong Zhang; Seung-Joo Lee; Arkadiusz W Kulczyk; Bin Zhu; Charles C Richardson
Journal:  J Biol Chem       Date:  2012-08-10       Impact factor: 5.157

5.  The glutamate switch of bacteriophage T7 DNA helicase: role in coupling nucleotide triphosphate (NTP) and DNA binding to NTP hydrolysis.

Authors:  Ajit K Satapathy; Charles C Richardson
Journal:  J Biol Chem       Date:  2011-05-12       Impact factor: 5.157

6.  Binding Affinities among DNA Helicase-Primase, DNA Polymerase, and Replication Intermediates in the Replisome of Bacteriophage T7.

Authors:  Huidong Zhang; Yong Tang; Seung-Joo Lee; Zeliang Wei; Jia Cao; Charles C Richardson
Journal:  J Biol Chem       Date:  2015-11-30       Impact factor: 5.157

Review 7.  Choreography of bacteriophage T7 DNA replication.

Authors:  Seung-Joo Lee; Charles C Richardson
Journal:  Curr Opin Chem Biol       Date:  2011-09-09       Impact factor: 8.822

8.  Residues located in the primase domain of the bacteriophage T7 primase-helicase are essential for loading the hexameric complex onto DNA.

Authors:  Alfredo J Hernandez; Seung-Joo Lee; Noah J Thompson; Jack D Griffith; Charles C Richardson
Journal:  J Biol Chem       Date:  2022-04-30       Impact factor: 5.486

9.  Computationally exploring the mechanism of bacteriophage T7 gp4 helicase translocating along ssDNA.

Authors:  Shikai Jin; Carlos Bueno; Wei Lu; Qian Wang; Mingchen Chen; Xun Chen; Peter G Wolynes; Yang Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-01       Impact factor: 12.779

  9 in total

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