Literature DB >> 17707227

Dynamic DNA helicase-DNA polymerase interactions assure processive replication fork movement.

Samir M Hamdan1, Donald E Johnson, Nathan A Tanner, Jong-Bong Lee, Udi Qimron, Stanley Tabor, Antoine M van Oijen, Charles C Richardson.   

Abstract

A single copy of bacteriophage T7 DNA polymerase and DNA helicase advance the replication fork with a processivity greater than 17,000 nucleotides. Nonetheless, the polymerase transiently dissociates from the DNA without leaving the replisome. Ensemble and single-molecule techniques demonstrate that this dynamic processivity is made possible by two modes of DNA polymerase-helicase interaction. During DNA synthesis the polymerase and the helicase interact at a high-affinity site. In this polymerizing mode, the polymerase dissociates from the DNA approximately every 5000 bases. The polymerase, however, remains bound to the helicase via an electrostatic binding mode that involves the acidic C-terminal tail of the helicase and a basic region in the polymerase to which the processivity factor also binds. The polymerase transfers via the electrostatic interaction around the hexameric helicase in search of the primer-template.

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Year:  2007        PMID: 17707227     DOI: 10.1016/j.molcel.2007.06.020

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  64 in total

1.  Conformational dynamics of bacteriophage T7 DNA polymerase and its processivity factor, Escherichia coli thioredoxin.

Authors:  Barak Akabayov; Sabine R Akabayov; Seung-Joo Lee; Stanley Tabor; Arkadiusz W Kulczyk; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-09       Impact factor: 11.205

2.  Two modes of interaction of the single-stranded DNA-binding protein of bacteriophage T7 with the DNA polymerase-thioredoxin complex.

Authors:  Sharmistha Ghosh; Samir M Hamdan; Charles C Richardson
Journal:  J Biol Chem       Date:  2010-04-06       Impact factor: 5.157

3.  Acidic C-terminal tail of the ssDNA-binding protein of bacteriophage T7 and ssDNA compete for the same binding surface.

Authors:  Boriana Marintcheva; Assen Marintchev; Gerhard Wagner; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-31       Impact factor: 11.205

4.  Fate of the replisome following arrest by UV-induced DNA damage in Escherichia coli.

Authors:  H Arthur Jeiranian; Brandy J Schalow; Charmain T Courcelle; Justin Courcelle
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-25       Impact factor: 11.205

5.  Residues in the central beta-hairpin of the DNA helicase of bacteriophage T7 are important in DNA unwinding.

Authors:  Ajit K Satapathy; Anna B Kochaniak; Sourav Mukherjee; Donald J Crampton; Antoine van Oijen; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-29       Impact factor: 11.205

6.  Thioredoxin suppresses microscopic hopping of T7 DNA polymerase on duplex DNA.

Authors:  Candice M Etson; Samir M Hamdan; Charles C Richardson; Antoine M van Oijen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-11       Impact factor: 11.205

Review 7.  Isothermal DNA amplification in vitro: the helicase-dependent amplification system.

Authors:  Yong-Joo Jeong; Kkothanahreum Park; Dong-Eun Kim
Journal:  Cell Mol Life Sci       Date:  2009-07-24       Impact factor: 9.261

8.  An in trans interaction at the interface of the helicase and primase domains of the hexameric gene 4 protein of bacteriophage T7 modulates their activities.

Authors:  Bin Zhu; Seung-Joo Lee; Charles C Richardson
Journal:  J Biol Chem       Date:  2009-07-01       Impact factor: 5.157

9.  Physiological and biochemical defects in carboxyl-terminal mutants of mitochondrial DNA helicase.

Authors:  Yuichi Matsushima; Carol L Farr; Li Fan; Laurie S Kaguni
Journal:  J Biol Chem       Date:  2008-06-30       Impact factor: 5.157

10.  Promiscuous usage of nucleotides by the DNA helicase of bacteriophage T7: determinants of nucleotide specificity.

Authors:  Ajit K Satapathy; Donald J Crampton; Benjamin B Beauchamp; Charles C Richardson
Journal:  J Biol Chem       Date:  2009-03-17       Impact factor: 5.157

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