Literature DB >> 20332277

Urine collection and processing for protein biomarker discovery and quantification.

C Eric Thomas1, Wade Sexton, Kaaron Benson, Rebecca Sutphen, John Koomen.   

Abstract

BACKGROUND: Urine is a useful source of protein for biomarker discovery and assessment because it is readily available, can be obtained by noninvasive collection methods, and enables monitoring of a wide range of physiologic processes and diseases. Urine aliquots provide enough protein for multiple analyses, combining current protocols with new techniques.
CONCLUSIONS: Standardized collection and processing protocols are now being established and new methods for protein detection and quantification are emerging to complement traditional immunoassays. The current state of urine collection, specimen processing, and storage is reviewed with regard to discovery and quantification of protein biomarkers for cancer.

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Year:  2010        PMID: 20332277      PMCID: PMC2852495          DOI: 10.1158/1055-9965.EPI-10-0069

Source DB:  PubMed          Journal:  Cancer Epidemiol Biomarkers Prev        ISSN: 1055-9965            Impact factor:   4.254


  66 in total

1.  Systematic evaluation of sample preparation methods for gel-based human urinary proteomics: quantity, quality, and variability.

Authors:  Visith Thongboonkerd; Somchai Chutipongtanate; Rattiyaporn Kanlaya
Journal:  J Proteome Res       Date:  2006-01       Impact factor: 4.466

2.  Exploring the hidden human urinary proteome via ligand library beads.

Authors:  Annalisa Castagna; Daniela Cecconi; Lau Sennels; Juri Rappsilber; Luc Guerrier; Frederic Fortis; Egisto Boschetti; Lee Lomas; Pier Giorgio Righetti
Journal:  J Proteome Res       Date:  2005 Nov-Dec       Impact factor: 4.466

3.  Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma.

Authors:  Michael A Kuzyk; Derek Smith; Juncong Yang; Tyra J Cross; Angela M Jackson; Darryl B Hardie; N Leigh Anderson; Christoph H Borchers
Journal:  Mol Cell Proteomics       Date:  2009-05-01       Impact factor: 5.911

Review 4.  A human proteome detection and quantitation project.

Authors:  N Leigh Anderson; Norman G Anderson; Terry W Pearson; Christoph H Borchers; Amanda G Paulovich; Scott D Patterson; Michael Gillette; Ruedi Aebersold; Steven A Carr
Journal:  Mol Cell Proteomics       Date:  2009-01-07       Impact factor: 5.911

5.  Systemic levels of interleukin-6 and matrix metalloproteinase-9 in patients with multiple myeloma may be useful as prognostic indexes of bone disease.

Authors:  Aikaterini Sfiridaki; Spiros Miyakis; George Tsirakis; Athanassios Alegakis; Andreas M Passam; Ermioni Kandidaki; Andrew N Margioris; Michael G Alexandrakis
Journal:  Clin Chem Lab Med       Date:  2005       Impact factor: 3.694

6.  Hypoxia increases VEGF-A production by prostate cancer and bone marrow stromal cells and initiates paracrine activation of bone marrow endothelial cells.

Authors:  Caroline Muir; Leland W K Chung; Daniel D Carson; Mary C Farach-Carson
Journal:  Clin Exp Metastasis       Date:  2006-07-07       Impact factor: 5.150

7.  Proteomic-based discovery and characterization of glycosylated eosinophil-derived neurotoxin and COOH-terminal osteopontin fragments for ovarian cancer in urine.

Authors:  Bin Ye; Steven Skates; Samuel C Mok; Nora K Horick; Helene F Rosenberg; Allison Vitonis; Dale Edwards; Patrick Sluss; Won K Han; Ross S Berkowitz; Daniel W Cramer
Journal:  Clin Cancer Res       Date:  2006-01-15       Impact factor: 12.531

8.  A study comparing various noninvasive methods of detecting bladder cancer in urine.

Authors:  A Saad; D C Hanbury; T A McNicholas; G B Boustead; S Morgan; A C Woodman
Journal:  BJU Int       Date:  2002-03       Impact factor: 5.588

9.  A depletion strategy for improved detection of human proteins from urine.

Authors:  Mark M Kushnir; Peter Mrozinski; Alan L Rockwood; David K Crockett
Journal:  J Biomol Tech       Date:  2009-04

10.  High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites.

Authors:  Jianru Stahl-Zeng; Vinzenz Lange; Reto Ossola; Katrin Eckhardt; Wilhelm Krek; Ruedi Aebersold; Bruno Domon
Journal:  Mol Cell Proteomics       Date:  2007-07-20       Impact factor: 5.911

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  34 in total

Review 1.  Isolation and characterization of urinary extracellular vesicles: implications for biomarker discovery.

Authors:  Michael L Merchant; Ilse M Rood; Jeroen K J Deegens; Jon B Klein
Journal:  Nat Rev Nephrol       Date:  2017-10-30       Impact factor: 28.314

2.  Comprehensive Analysis of Individual Variation in the Urinary Proteome Revealed Significant Gender Differences.

Authors:  Chen Shao; Mindi Zhao; Xizhao Chen; Haidan Sun; Yehong Yang; Xiaoping Xiao; Zhengguang Guo; Xiaoyan Liu; Yang Lv; Xiangmei Chen; Wei Sun; Di Wu; Youhe Gao
Journal:  Mol Cell Proteomics       Date:  2019-03-20       Impact factor: 5.911

3.  Site-specific characterization of N-linked glycosylation in human urinary glycoproteins and endogenous glycopeptides.

Authors:  Rebeca Kawahara; Joyce Saad; Claudia Blanes Angeli; Giuseppe Palmisano
Journal:  Glycoconj J       Date:  2016-05-27       Impact factor: 2.916

4.  The renal transcriptome of db/db mice identifies putative urinary biomarker proteins in patients with type 2 diabetes: a pilot study.

Authors:  Michael S Simonson; Margaret Tiktin; Sara M Debanne; Mahboob Rahman; Bruce Berger; Donald Hricik; Faramarz Ismail-Beigi
Journal:  Am J Physiol Renal Physiol       Date:  2011-12-28

5.  Histidine decarboxylase is identified as a potential biomarker of intestinal mucosal injury in patients with acute intestinal obstruction.

Authors:  Jian-Jun Yang; Yan-Lei Ma; Peng Zhang; Hong-Qi Chen; Zhi-Hua Liu; Huan-Long Qin
Journal:  Mol Med       Date:  2011-09-09       Impact factor: 6.354

Review 6.  Mass spectrometry-based proteomics of endoscopically collected pancreatic fluid in chronic pancreatitis research.

Authors:  Joao A Paulo; Linda S Lee; Bechien Wu; Peter A Banks; Hanno Steen; Darwin L Conwell
Journal:  Proteomics Clin Appl       Date:  2011-03-01       Impact factor: 3.494

Review 7.  Contributions of immunoaffinity chromatography to deep proteome profiling of human biofluids.

Authors:  Chaochao Wu; Jicheng Duan; Tao Liu; Richard D Smith; Wei-Jun Qian
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2016-01-12       Impact factor: 3.205

8.  Elevated expression levels of ANXA11, integrins β3 and α3, and TNF-α contribute to a candidate proteomic signature in urine for kidney allograft rejection.

Authors:  Meera Srivastava; Ofer Eidelman; Yelizaveta Torosyan; Catherine Jozwik; Roslyn B Mannon; Harvey B Pollard
Journal:  Proteomics Clin Appl       Date:  2011-05-18       Impact factor: 3.494

9.  Multidimensional liquid chromatography platform for profiling alterations of clusterin N-glycosylation in the plasma of patients with renal cell carcinoma.

Authors:  Fateme Tousi; Jonathan Bones; Othon Iliopoulos; William S Hancock; Marina Hincapie
Journal:  J Chromatogr A       Date:  2012-07-28       Impact factor: 4.759

Review 10.  Biomarker discovery in mass spectrometry-based urinary proteomics.

Authors:  Samuel Thomas; Ling Hao; William A Ricke; Lingjun Li
Journal:  Proteomics Clin Appl       Date:  2016-02-11       Impact factor: 3.494

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