Literature DB >> 26868616

Contributions of immunoaffinity chromatography to deep proteome profiling of human biofluids.

Chaochao Wu1, Jicheng Duan1, Tao Liu1, Richard D Smith1, Wei-Jun Qian2.   

Abstract

Human biofluids, especially blood plasma or serum, hold great potential as the sources of candidate biomarkers for various diseases; however, the enormous dynamic range of protein concentrations in biofluids represents a significant analytical challenge for detecting promising low-abundance proteins. Over the last decade, various immunoaffinity chromatographic methods have been developed and routinely applied for separating low-abundance proteins from the high- and moderate-abundance proteins, thus enabling much more effective detection of low-abundance proteins. Herein, we review the advances of immunoaffinity separation methods and their contributions to the proteomic applications in human biofluids. The limitations and future perspectives of immunoaffinity separation methods are also discussed.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Affinity proteomics; Biofluid; Biomarker discovery; Immunoaffinity chromatography; Immunodepletion; Immunoenrichment; Plasma/Serum; Proteomics

Mesh:

Substances:

Year:  2016        PMID: 26868616      PMCID: PMC4862894          DOI: 10.1016/j.jchromb.2016.01.015

Source DB:  PubMed          Journal:  J Chromatogr B Analyt Technol Biomed Life Sci        ISSN: 1570-0232            Impact factor:   3.205


  157 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

4.  Alterations in protein regulators of neurodevelopment in the cerebrospinal fluid of infants with posthemorrhagic hydrocephalus of prematurity.

Authors:  Diego M Morales; R Reid Townsend; James P Malone; Carissa A Ewersmann; Elizabeth M Macy; Terrie E Inder; David D Limbrick
Journal:  Mol Cell Proteomics       Date:  2011-12-20       Impact factor: 5.911

5.  Intact-protein-based high-resolution three-dimensional quantitative analysis system for proteome profiling of biological fluids.

Authors:  Hong Wang; Shawn G Clouthier; Vladimir Galchev; David E Misek; Ulrich Duffner; Chang-Ki Min; Rong Zhao; John Tra; Gilbert S Omenn; James L M Ferrara; Samir M Hanash
Journal:  Mol Cell Proteomics       Date:  2005-02-09       Impact factor: 5.911

6.  Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling.

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Journal:  Nat Biotechnol       Date:  2010-07-18       Impact factor: 54.908

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8.  A mass spectrometry-based plasma protein panel targeting the tumor microenvironment in patients with breast cancer.

Authors:  Alejandro Cohen; Edwin Wang; Kenneth A Chisholm; Ripsik Kostyleva; Maureen O'Connor-McCourt; Devanand M Pinto
Journal:  J Proteomics       Date:  2012-11-20       Impact factor: 4.044

9.  Microscale depletion of high abundance proteins in human biofluids using IgY14 immunoaffinity resin: analysis of human plasma and cerebrospinal fluid.

Authors:  Seok-Won Hyung; Paul D Piehowski; Ronald J Moore; Daniel J Orton; Athena A Schepmoes; Therese R Clauss; Rosalie K Chu; Thomas L Fillmore; Heather Brewer; Tao Liu; Rui Zhao; Richard D Smith
Journal:  Anal Bioanal Chem       Date:  2014-09-06       Impact factor: 4.142

10.  A proteomic approach for plasma biomarker discovery with iTRAQ labelling and OFFGEL fractionation.

Authors:  Emilie Ernoult; Anthony Bourreau; Erick Gamelin; Catherine Guette
Journal:  J Biomed Biotechnol       Date:  2009-11-01
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  10 in total

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Journal:  Expert Rev Proteomics       Date:  2019-06-24       Impact factor: 3.940

2.  Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data.

Authors:  Vera Ignjatovic; Philipp E Geyer; Krishnan K Palaniappan; Jessica E Chaaban; Gilbert S Omenn; Mark S Baker; Eric W Deutsch; Jochen M Schwenk
Journal:  J Proteome Res       Date:  2019-10-11       Impact factor: 4.466

Review 3.  Paleoproteomics.

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Journal:  Chem Rev       Date:  2022-07-15       Impact factor: 72.087

4.  Assessment of the Utility of the Oral Fluid and Plasma Proteomes for Hydrocodone Exposure.

Authors:  Brooke L Deatherage Kaiser; Jon M Jacobs; Athena A Schepmoes; Heather M Brewer; Bobbie-Jo M Webb-Robertson; Sandra Valtier; Vikhyat S Bebarta; Joshua N Adkins
Journal:  J Med Toxicol       Date:  2019-11-01

5.  Needle lost in the haystack: multiple reaction monitoring fails to detect Treponema pallidum candidate protein biomarkers in plasma and urine samples from individuals with syphilis.

Authors:  Geert A Van Raemdonck; Kara K Osbak; Xaveer Van Ostade; Chris R Kenyon
Journal:  F1000Res       Date:  2018-03-19

6.  Evaluation of Aptamers as Affinity Reagents for an Enhancement of SRM-Based Detection of Low-Abundance Proteins in Blood Plasma.

Authors:  Sergey Radko; Konstantin Ptitsyn; Svetlana Novikova; Yana Kiseleva; Alexander Moysa; Leonid Kurbatov; Maria Mannanova; Victor Zgoda; Elena Ponomarenko; Andrey Lisitsa; Alexander Archakov
Journal:  Biomedicines       Date:  2020-05-24

7.  Proteomic analysis of platelet-rich and platelet-poor plasma.

Authors:  Olga Miroshnychenko; Robert J Chalkley; Ryan D Leib; Peter A Everts; Jason L Dragoo
Journal:  Regen Ther       Date:  2020-11-01       Impact factor: 3.419

8.  Nanoparticle Biomolecular Corona-Based Enrichment of Plasma Glycoproteins for N-Glycan Profiling and Application in Biomarker Discovery.

Authors:  Duong N Trinh; Richard A Gardner; Alessandro N Franciosi; Cormac McCarthy; Michael P Keane; Mahmoud G Soliman; James S O'Donnell; Paula Meleady; Daniel I R Spencer; Marco P Monopoli
Journal:  ACS Nano       Date:  2022-03-28       Impact factor: 18.027

Review 9.  Proteomic Discovery and Validation of Novel Fluid Biomarkers for Improved Patient Selection and Prediction of Clinical Outcomes in Alzheimer's Disease Patient Cohorts.

Authors:  Shivangi Awasthi; Daniel S Spellman; Nathan G Hatcher
Journal:  Proteomes       Date:  2022-08-01

Review 10.  Contribution of Multiplex Immunoassays to Rheumatoid Arthritis Management: From Biomarker Discovery to Personalized Medicine.

Authors:  Carlos M Laborde; Patricia Castro-Santos; Roberto Díaz-Peña
Journal:  J Pers Med       Date:  2020-10-30
  10 in total

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