Literature DB >> 20309766

Practical issues in building risk-predicting models for complex diseases.

Jia Kang1, Judy Cho, Hongyu Zhao.   

Abstract

Recent genome-wide association studies have identified many genetic variants affecting complex human diseases. It is of great interest to build disease risk prediction models based on these data. In this article, we first discuss statistical challenges in using genome-wide association data for risk predictions, and then review the findings from the literature on this topic. We also demonstrate the performance of different methods through both simulation studies and application to real-world data.

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Year:  2010        PMID: 20309766      PMCID: PMC3685822          DOI: 10.1080/10543400903572829

Source DB:  PubMed          Journal:  J Biopharm Stat        ISSN: 1054-3406            Impact factor:   1.051


  52 in total

Review 1.  Association study designs for complex diseases.

Authors:  L R Cardon; J I Bell
Journal:  Nat Rev Genet       Date:  2001-02       Impact factor: 53.242

Review 2.  Assessing the risk of breast cancer.

Authors:  K Armstrong; A Eisen; B Weber
Journal:  N Engl J Med       Date:  2000-02-24       Impact factor: 91.245

3.  Misconceptions about the use of genetic tests in populations.

Authors:  P Vineis; P Schulte; A J McMichael
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4.  A combinatorial partitioning method to identify multilocus genotypic partitions that predict quantitative trait variation.

Authors:  M R Nelson; S L Kardia; R E Ferrell; C F Sing
Journal:  Genome Res       Date:  2001-03       Impact factor: 9.043

5.  Will genetics revolutionize medicine?

Authors:  N A Holtzman; T M Marteau
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6.  Replication validity of genetic association studies.

Authors:  J P Ioannidis; E E Ntzani; T A Trikalinos; D G Contopoulos-Ioannidis
Journal:  Nat Genet       Date:  2001-11       Impact factor: 38.330

7.  Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer.

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8.  Molecular classification of cancer: class discovery and class prediction by gene expression monitoring.

Authors:  T R Golub; D K Slonim; P Tamayo; C Huard; M Gaasenbeek; J P Mesirov; H Coller; M L Loh; J R Downing; M A Caligiuri; C D Bloomfield; E S Lander
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9.  Implications of the Human Genome Project for medical science.

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Review 10.  A comprehensive review of genetic association studies.

Authors:  Joel N Hirschhorn; Kirk Lohmueller; Edward Byrne; Kurt Hirschhorn
Journal:  Genet Med       Date:  2002 Mar-Apr       Impact factor: 8.822

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  12 in total

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Review 5.  Combining genetic and nongenetic biomarkers to realize the promise of pharmacogenomics for inflammatory diseases.

Authors:  Joseph C Maranville; Anna Di Rienzo
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7.  Genetic Biomarkers to Identify the Risk of Osteonecrosis in Children with Acute Lymphoblastic Leukemia.

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Journal:  Mol Diagn Ther       Date:  2016-12       Impact factor: 4.074

8.  Plateau effect of prostate cancer risk-associated SNPs in discriminating prostate biopsy outcomes.

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9.  Effector CD4+ T cell expression signatures and immune-mediated disease associated genes.

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10.  A scoring strategy combining statistics and functional genomics supports a possible role for common polygenic variation in autism.

Authors:  Jérôme Carayol; Gerard D Schellenberg; Beth Dombroski; Claire Amiet; Bérengère Génin; Karine Fontaine; Francis Rousseau; Céline Vazart; David Cohen; Thomas W Frazier; Antonio Y Hardan; Geraldine Dawson; Thomas Rio Frio
Journal:  Front Genet       Date:  2014-02-18       Impact factor: 4.599

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