Literature DB >> 25847392

Predicting cumulative risk of disease onset by redistributing weights.

Tianle Chen1, Yanyuan Ma2, Yuanjia Wang3.   

Abstract

We propose a simple approach predicting the cumulative risk of disease accommodating predictors with time-varying effects and outcomes subject to censoring. We use a nonparametric function for the coefficient of the time-varying effect and handle censoring through self-consistency equations that redistribute the probability mass of censored outcomes to the right. The computational procedure is extremely convenient and can be implemented by standard software. We prove large sample properties of the proposed estimator and evaluate its finite sample performance through simulation studies. We apply the method to estimate the cumulative risk of developing Huntington's disease (HD) from subjects with huntingtin gene mutation using a large collaborative HD study data and illustrate an inverse relationship between the cumulative risk of HD and the length of cytosine-adenine-guanine repeats in the huntingtin gene.
Copyright © 2015 John Wiley & Sons, Ltd.

Entities:  

Keywords:  Huntington's disease; proportional odds model; self-consistency equation; varying-coefficient model

Mesh:

Substances:

Year:  2015        PMID: 25847392      PMCID: PMC4457675          DOI: 10.1002/sim.6499

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  11 in total

Review 1.  CAG-repeat length and the age of onset in Huntington disease (HD): a review and validation study of statistical approaches.

Authors:  Douglas R Langbehn; Michael R Hayden; Jane S Paulsen
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2010-03-05       Impact factor: 3.568

2.  A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's disease chromosomes. The Huntington's Disease Collaborative Research Group.

Authors: 
Journal:  Cell       Date:  1993-03-26       Impact factor: 41.582

3.  Nonparametric estimation for censored mixture data with application to the Cooperative Huntington's Observational Research Trial.

Authors:  Yuanjia Wang; Tanya P Garcia; Yanyuan Ma
Journal:  J Am Stat Assoc       Date:  2012       Impact factor: 5.033

Review 4.  Practical issues in building risk-predicting models for complex diseases.

Authors:  Jia Kang; Judy Cho; Hongyu Zhao
Journal:  J Biopharm Stat       Date:  2010-03       Impact factor: 1.051

5.  Estimating Regression Parameters in an Extended Proportional Odds Model.

Authors:  Ying Qing Chen; Nan Hu; Su-Chun Cheng; Philippa Musoke; Lue Ping Zhao
Journal:  J Am Stat Assoc       Date:  2012-01-31       Impact factor: 5.033

6.  Predicting Disease Onset from Mutation Status Using Proband and Relative Data with Applications to Huntington's Disease.

Authors:  Tianle Chen; Yuanjia Wang; Yanyuan Ma; Karen Marder; Douglas R Langbehn
Journal:  J Probab Stat       Date:  2012-01-01

7.  ANALYSIS ON CENSORED QUANTILE RESIDUAL LIFE MODEL VIA SPLINE SMOOTHING.

Authors:  Yanyuan Ma; Ying Wei
Journal:  Stat Sin       Date:  2012-01-01       Impact factor: 1.261

8.  A new model for prediction of the age of onset and penetrance for Huntington's disease based on CAG length.

Authors:  D R Langbehn; R R Brinkman; D Falush; J S Paulsen; M R Hayden
Journal:  Clin Genet       Date:  2004-04       Impact factor: 4.438

9.  Communicating clinical trial results to research participants.

Authors:  E Ray Dorsey; Christopher A Beck; Mary Adams; Gary Chadwick; Elisabeth A de Blieck; Colleen McCallum; Leslie Briner; Lisa Deuel; Anthony Clarke; Rick Stewart; Ira Shoulson
Journal:  Arch Neurol       Date:  2008-12

10.  CAG repeat expansion in Huntington disease determines age at onset in a fully dominant fashion.

Authors:  J-M Lee; E M Ramos; J-H Lee; T Gillis; J S Mysore; M R Hayden; S C Warby; P Morrison; M Nance; C A Ross; R L Margolis; F Squitieri; S Orobello; S Di Donato; E Gomez-Tortosa; C Ayuso; O Suchowersky; R J A Trent; E McCusker; A Novelletto; M Frontali; R Jones; T Ashizawa; S Frank; M H Saint-Hilaire; S M Hersch; H D Rosas; D Lucente; M B Harrison; A Zanko; R K Abramson; K Marder; J Sequeiros; J S Paulsen; G B Landwehrmeyer; R H Myers; M E MacDonald; J F Gusella
Journal:  Neurology       Date:  2012-02-08       Impact factor: 9.910

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