Literature DB >> 20300217

Chromosome territories.

Thomas Cremer1, Marion Cremer.   

Abstract

Chromosome territories (CTs) constitute a major feature of nuclear architecture. In a brief statement, the possible contribution of nuclear architecture studies to the field of epigenomics is considered, followed by a historical account of the CT concept and the final compelling experimental evidence of a territorial organization of chromosomes in all eukaryotes studied to date. Present knowledge of nonrandom CT arrangements, of the internal CT architecture, and of structural interactions with other CTs is provided as well as the dynamics of CT arrangements during cell cycle and postmitotic terminal differentiation. The article concludes with a discussion of open questions and new experimental strategies to answer them.

Mesh:

Year:  2010        PMID: 20300217      PMCID: PMC2829961          DOI: 10.1101/cshperspect.a003889

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  144 in total

1.  Focused ion beam (FIB) combined with high resolution scanning electron microscopy: a promising tool for 3D analysis of chromosome architecture.

Authors:  Elizabeth Schroeder-Reiter; Fabián Pérez-Willard; Ulrike Zeile; Gerhard Wanner
Journal:  J Struct Biol       Date:  2008-11-05       Impact factor: 2.867

2.  Spatial organization of nucleotide excision repair proteins after UV-induced DNA damage in the human cell nucleus.

Authors:  Liliana Solimando; Martijn S Luijsterburg; Lorella Vecchio; Wim Vermeulen; Roel van Driel; Stanislav Fakan
Journal:  J Cell Sci       Date:  2008-12-09       Impact factor: 5.285

Review 3.  Nuclear architecture and gene regulation.

Authors:  Elena Fedorova; Daniele Zink
Journal:  Biochim Biophys Acta       Date:  2008-07-31

Review 4.  Long range chromatin interactions involved in gene regulation.

Authors:  Marek Bartkuhn; Rainer Renkawitz
Journal:  Biochim Biophys Acta       Date:  2008-07-28

Review 5.  FISH-eyed and genome-wide views on the spatial organisation of gene expression.

Authors:  Marieke Simonis; Wouter de Laat
Journal:  Biochim Biophys Acta       Date:  2008-08-05

6.  Multicolor 3D fluorescence in situ hybridization for imaging interphase chromosomes.

Authors:  Marion Cremer; Florian Grasser; Christian Lanctôt; Stefan Müller; Michaela Neusser; Roman Zinner; Irina Solovei; Thomas Cremer
Journal:  Methods Mol Biol       Date:  2008

7.  Three-dimensional positioning of genes in mouse cell nuclei.

Authors:  Claudia Hepperger; Alexander Mannes; Julia Merz; Jürgen Peters; Steffen Dietzel
Journal:  Chromosoma       Date:  2008-07-03       Impact factor: 4.316

8.  Spatially confined folding of chromatin in the interphase nucleus.

Authors:  Julio Mateos-Langerak; Manfred Bohn; Wim de Leeuw; Osdilly Giromus; Erik M M Manders; Pernette J Verschure; Mireille H G Indemans; Hinco J Gierman; Dieter W Heermann; Roel van Driel; Sandra Goetze
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-20       Impact factor: 11.205

Review 9.  Nucleosome positioning and gene regulation: advances through genomics.

Authors:  Cizhong Jiang; B Franklin Pugh
Journal:  Nat Rev Genet       Date:  2009-03       Impact factor: 53.242

10.  Chromatin position in human HepG2 cells: although being non-random, significantly changed in daughter cells.

Authors:  Zuzana Cvacková; Martin Masata; David Stanĕk; Helena Fidlerová; Ivan Raska
Journal:  J Struct Biol       Date:  2008-11-12       Impact factor: 2.867

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  428 in total

1.  Functional nuclear topography of transcriptionally inducible extra-chromosomal transgene clusters.

Authors:  Manja Meggendorfer; Claudia Weierich; Horst Wolff; Ruth Brack-Werner; Thomas Cremer
Journal:  Chromosome Res       Date:  2010-06-08       Impact factor: 5.239

2.  The fractal globule as a model of chromatin architecture in the cell.

Authors:  Leonid A Mirny
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

Review 3.  Metazoan promoters: emerging characteristics and insights into transcriptional regulation.

Authors:  Boris Lenhard; Albin Sandelin; Piero Carninci
Journal:  Nat Rev Genet       Date:  2012-03-06       Impact factor: 53.242

4.  Higher-order genomic organization in pluripotent stem cells.

Authors:  Ping Wang; Weiqi Zhang; Jiping Yang; Jing Qu; Guang-Hui Liu
Journal:  Protein Cell       Date:  2012-07       Impact factor: 14.870

5.  Pairing of lacO tandem repeats in Arabidopsis thaliana nuclei requires the presence of hypermethylated, large arrays at two chromosomal positions, but does not depend on H3-lysine-9-dimethylation.

Authors:  Gabriele Jovtchev; Branimira Emilova Borisova; Markus Kuhlmann; Jörg Fuchs; Koichi Watanabe; Ingo Schubert; Michael Florian Mette
Journal:  Chromosoma       Date:  2011-08-10       Impact factor: 4.316

6.  The genome in space and time: does form always follow function? How does the spatial and temporal organization of a eukaryotic genome reflect and influence its functions?

Authors:  Zhijun Duan; Carl Anthony Blau
Journal:  Bioessays       Date:  2012-07-06       Impact factor: 4.345

Review 7.  Coming to terms with chromatin structure.

Authors:  Liron Even-Faitelson; Vahideh Hassan-Zadeh; Zahra Baghestani; David P Bazett-Jones
Journal:  Chromosoma       Date:  2015-07-30       Impact factor: 4.316

8.  Reorganization of the interchromosomal network during keratinocyte differentiation.

Authors:  Nitasha Sehgal; Brandon Seifert; Hu Ding; Zihe Chen; Branislav Stojkovic; Sambit Bhattacharya; Jinhui Xu; Ronald Berezney
Journal:  Chromosoma       Date:  2015-10-21       Impact factor: 4.316

Review 9.  Manipulating nuclear architecture.

Authors:  Wulan Deng; Gerd A Blobel
Journal:  Curr Opin Genet Dev       Date:  2013-12-12       Impact factor: 5.578

10.  A misplaced lncRNA causes brachydactyly in humans.

Authors:  Philipp G Maass; Andreas Rump; Herbert Schulz; Sigmar Stricker; Lisanne Schulze; Konrad Platzer; Atakan Aydin; Sigrid Tinschert; Mary B Goldring; Friedrich C Luft; Sylvia Bähring
Journal:  J Clin Invest       Date:  2012-10-24       Impact factor: 14.808

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