Literature DB >> 22673779

Higher-order genomic organization in pluripotent stem cells.

Ping Wang1, Weiqi Zhang, Jiping Yang, Jing Qu, Guang-Hui Liu.   

Abstract

Recent applications of new tools for genome-wide mapping of long-range and spatial interactions have shed light onto the fundamental mechanisms of three dimensional chromatin organizations in pluripotent stem cells and their derivatives.

Mesh：

Substances：

Year:  2012        PMID： 22673779      PMCID： PMC4875389          DOI： 10.1007/s13238-012-2806-y

Source DB:  PubMed          Journal:  Protein Cell        ISSN： 1674-800X            Impact factor:   14.870


  19 in total

1.  Efficient correction of hemoglobinopathy-causing mutations by homologous recombination in integration-free patient iPSCs.

Authors:  Mo Li; Keiichiro Suzuki; Jing Qu; Preeti Saini; Ilir Dubova; Fei Yi; Jungmin Lee; Ignacio Sancho-Martinez; Guang-Hui Liu; Juan Carlos Izpisua Belmonte
Journal:  Cell Res       Date:  2011-11-22       Impact factor: 25.617

2.  The dynamic architecture of Hox gene clusters.

Authors:  Daan Noordermeer; Marion Leleu; Erik Splinter; Jacques Rougemont; Wouter De Laat; Denis Duboule
Journal:  Science       Date:  2011-10-14       Impact factor: 47.728

3.  The silence of the LADs: dynamic genome-lamina interactions during ESC differentiation.

Authors:  Shai Melcer; Eran Meshorer
Journal:  Cell Stem Cell       Date:  2010-06-04       Impact factor: 24.633

4.  Cell biology: chromosome territories.

Authors:  Karen J Meaburn; Tom Misteli
Journal:  Nature       Date:  2007-01-25       Impact factor: 49.962

Review 5.  Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions.

Authors:  Christian Lanctôt; Thierry Cheutin; Marion Cremer; Giacomo Cavalli; Thomas Cremer
Journal:  Nat Rev Genet       Date:  2007-02       Impact factor: 53.242

6.  Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.

Authors:  Josée Dostie; Todd A Richmond; Ramy A Arnaout; Rebecca R Selzer; William L Lee; Tracey A Honan; Eric D Rubio; Anton Krumm; Justin Lamb; Chad Nusbaum; Roland D Green; Job Dekker
Journal:  Genome Res       Date:  2006-09-05       Impact factor: 9.043

7.  Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions.

Authors:  Lars Guelen; Ludo Pagie; Emilie Brasset; Wouter Meuleman; Marius B Faza; Wendy Talhout; Bert H Eussen; Annelies de Klein; Lodewyk Wessels; Wouter de Laat; Bas van Steensel
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

8.  Targeted gene correction of laminopathy-associated LMNA mutations in patient-specific iPSCs.

Authors:  Guang-Hui Liu; Keiichiro Suzuki; Jing Qu; Ignacio Sancho-Martinez; Fei Yi; Mo Li; Sachin Kumar; Emmanuel Nivet; Jessica Kim; Rupa Devi Soligalla; Ilir Dubova; April Goebl; Nongluk Plongthongkum; Ho-Lim Fung; Kun Zhang; Jeanne F Loring; Louise C Laurent; Juan Carlos Izpisua Belmonte
Journal:  Cell Stem Cell       Date:  2011-05-19       Impact factor: 24.633

9.  Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation.

Authors:  Daan Peric-Hupkes; Wouter Meuleman; Ludo Pagie; Sophia W M Bruggeman; Irina Solovei; Wim Brugman; Stefan Gräf; Paul Flicek; Ron M Kerkhoven; Maarten van Lohuizen; Marcel Reinders; Lodewyk Wessels; Bas van Steensel
Journal:  Mol Cell       Date:  2010-05-28       Impact factor: 17.970

10.  Topological domains in mammalian genomes identified by analysis of chromatin interactions.

Authors:  Jesse R Dixon; Siddarth Selvaraj; Feng Yue; Audrey Kim; Yan Li; Yin Shen; Ming Hu; Jun S Liu; Bing Ren
Journal:  Nature       Date:  2012-04-11       Impact factor: 49.962
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  3 in total

1.  The distribution of genomic variations in human iPSCs is related to replication-timing reorganization during reprogramming.

Authors:  Junjie Lu; Hu Li; Ming Hu; Takayo Sasaki; Anna Baccei; David M Gilbert; Jun S Liu; James J Collins; Paul H Lerou
Journal:  Cell Rep       Date:  2014-03-27       Impact factor: 9.423

Review 2.  Lung endoderm morphogenesis: gasping for form and function.

Authors:  Daniel T Swarr; Edward E Morrisey
Journal:  Annu Rev Cell Dev Biol       Date:  2015-09-10       Impact factor: 13.827

Review 3.  Architectural proteins: regulators of 3D genome organization in cell fate.

Authors:  Elena Gómez-Díaz; Victor G Corces
Journal:  Trends Cell Biol       Date:  2014-09-10       Impact factor: 20.808
  3 in total

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