Literature DB >> 20225826

Hydrogen tunneling in adenosylcobalamin-dependent glutamate mutase: evidence from intrinsic kinetic isotope effects measured by intramolecular competition.

Miri Yoon1, Hangtian Song, Kristina Håkansson, E Neil G Marsh.   

Abstract

Hydrogen atom transfer reactions between the substrate and coenzyme are key mechanistic features of all adenosylcobalamin-dependent enzymes. For one of these enzymes, glutamate mutase, we have investigated whether hydrogen tunneling makes a significant contribution to the mechanism by examining the temperature dependence of the deuterium kinetic isotope effect associated with the transfer of a hydrogen atom from methylaspartate to the coenzyme. To do this, we designed a novel intramolecular competition experiment that allowed us to measure the intrinsic kinetic isotope effect, even though hydrogen transfer may not be rate-determining. From the Arrhenius plot of the kinetic isotope effect, the ratio of the pre-exponential factors (A(H)/A(D)) was 0.17 +/- 0.04 and the isotope effect on the activation energy [DeltaE(a(D-H))] was 1.94 +/- 0.13 kcal/mol. The results imply that a significant degree of hydrogen tunneling occurs in glutamate mutase, even though the intrinsic kinetic isotope effects are well within the semiclassical limit and are much smaller than those measured for other AdoCbl enzymes and model reactions for which hydrogen tunneling has been implicated.

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Year:  2010        PMID: 20225826      PMCID: PMC2851448          DOI: 10.1021/bi1001695

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  42 in total

1.  Baseline mass resolution of peptide isobars: a record for molecular mass resolution.

Authors:  F He; C L Hendrickson; A G Marshall
Journal:  Anal Chem       Date:  2001-02-01       Impact factor: 6.986

2.  Adenosylcobalamin-dependent glutamate mutase: pre-steady-state kinetic methods for investigating reaction mechanism.

Authors:  Hung-Wei Chih; Ipsita Roymoulik; Marja S Huhta; Prashanti Madhavapeddi; E Neil G Marsh
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

3.  Tunneling and coupled motion in the Escherichia coli dihydrofolate reductase catalysis.

Authors:  R Steven Sikorski; Lin Wang; Kelli A Markham; P T Ravi Rajagopalan; Stephen J Benkovic; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2004-04-21       Impact factor: 15.419

4.  Adenosylcobalamin-dependent glutamate mutase: examination of substrate and coenzyme binding in an engineered fusion protein possessing simplified subunit structure and kinetic properties.

Authors:  H P Chen; E N Marsh
Journal:  Biochemistry       Date:  1997-12-02       Impact factor: 3.162

Review 5.  Hydrogen tunneling in biology.

Authors:  A Kohen; J P Klinman
Journal:  Chem Biol       Date:  1999-07

6.  Examination of enzymatic H-tunneling through kinetics and dynamics.

Authors:  Jigar N Bandaria; Christopher M Cheatum; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

7.  Counting individual sulfur atoms in a protein by ultrahigh-resolution Fourier transform ion cyclotron resonance mass spectrometry: experimental resolution of isotopic fine structure in proteins.

Authors:  S D Shi; C L Hendrickson; A G Marshall
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-29       Impact factor: 11.205

8.  Pre-steady-state kinetic studies on the Glu171Gln active site mutant of adenosylcobalamin-dependent glutamate mutase.

Authors:  Prashanti Madhavapeddi; David P Ballou; E Neil G Marsh
Journal:  Biochemistry       Date:  2002-12-31       Impact factor: 3.162

9.  Evidence for coupled motion and hydrogen tunneling of the reaction catalyzed by glutamate mutase.

Authors:  Mou-Chi Cheng; E Neil G Marsh
Journal:  Biochemistry       Date:  2007-01-23       Impact factor: 3.162

10.  Synthesis of Mono- and Di-Deuterated (2S, 3S)-3-Methylaspartic Acids to Facilitate Measurement of Intrinsic Kinetic Isotope Effects in Enzymes.

Authors:  Hyang-Yeol Lee; Miri Yoon; E Neil G Marsh
Journal:  Tetrahedron       Date:  2007-05-28       Impact factor: 2.457

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  7 in total

1.  Mechanism of the Swern oxidation: significant deviations from transition state theory.

Authors:  Thomas Giagou; Matthew P Meyer
Journal:  J Org Chem       Date:  2010-11-02       Impact factor: 4.354

Review 2.  Adenosylcobalamin enzymes: theory and experiment begin to converge.

Authors:  E Neil G Marsh; Gabriel D Román Meléndez
Journal:  Biochim Biophys Acta       Date:  2012-04-03

3.  Kinetic isotope effects in asymmetric reactions.

Authors:  Thomas Giagou; Matthew P Meyer
Journal:  Chemistry       Date:  2010-09-17       Impact factor: 5.236

4.  Temperature-Independent Kinetic Isotope Effects as Evidence for a Marcus-like Model of Hydride Tunneling in Phosphite Dehydrogenase.

Authors:  Graeme W Howe; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2019-10-07       Impact factor: 3.162

5.  Probing reversible chemistry in coenzyme B12 -dependent ethanolamine ammonia lyase with kinetic isotope effects.

Authors:  Alex R Jones; Julius Rentergent; Nigel S Scrutton; Sam Hay
Journal:  Chemistry       Date:  2015-05-07       Impact factor: 5.236

6.  Solvent isotope effects on alkane formation by cyanobacterial aldehyde deformylating oxygenase and their mechanistic implications.

Authors:  Matthew W Waugh; E Neil G Marsh
Journal:  Biochemistry       Date:  2014-08-21       Impact factor: 3.162

7.  Role of active site residues in promoting cobalt-carbon bond homolysis in adenosylcobalamin-dependent mutases revealed through experiment and computation.

Authors:  Gabriel D Román-Meléndez; Patrick von Glehn; Jeremy N Harvey; Adrian J Mulholland; E Neil G Marsh
Journal:  Biochemistry       Date:  2013-12-20       Impact factor: 3.162

  7 in total

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