Literature DB >> 31535852

Temperature-Independent Kinetic Isotope Effects as Evidence for a Marcus-like Model of Hydride Tunneling in Phosphite Dehydrogenase.

Graeme W Howe1,2, Wilfred A van der Donk1,2,3.   

Abstract

Phosphite dehydrogenase catalyzes the transfer of a hydride from phosphite to NAD+, producing phosphate and NADH. We have evaluated the role of hydride tunneling in a thermostable variant of this enzyme (17X-PTDH) by measuring the temperature dependence of the primary 2H kinetic isotope effects (KIEs) between 5 and 45 °C. Pre-steady-state kinetic measurements were used to demonstrate that the hydride transfer is rate-determining across this temperature range and that the observed KIEs are equal to the intrinsic isotope effect on the chemical step. The KIEs on the pre-exponential factor (AH/AD) and the activation energy (ΔEa) were 1.6 ± 0.1 and 0.21 ± 0.05 kcal/mol, respectively, suggesting that 17X-PTDH facilitates extensive tunneling of both isotopes via a Marcus-like model. Site-directed mutagenesis was used to evaluate the role of an active site threonine (Thr104) found on the back face of the nicotinamide in promoting the close packing of the substrates. In mutants with reduced steric bulk at this position, values of AH/AD and ΔEa fall within the range describing semiclassical "over the barrier" reactivity, suggesting that Thr104 acts as a steric backstop to promote tunneling in 17X-PTDH. Whereas hydrogen tunneling is now a widely appreciated feature of C-H activating enzymes, these observations with a P-H activating system are consistent with the proposal that tunneling is likely to be a common feature on all enzymes that catalyze hydrogen transfers.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 31535852      PMCID: PMC6852621          DOI: 10.1021/acs.biochem.9b00732

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  69 in total

1.  Purification and characterization of a novel phosphorus-oxidizing enzyme from Pseudomonas stutzeri WM88.

Authors:  A M Costas; A K White; W W Metcalf
Journal:  J Biol Chem       Date:  2001-02-22       Impact factor: 5.157

2.  Elusive transition state of alcohol dehydrogenase unveiled.

Authors:  Daniel Roston; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

3.  Kinetic studies of the mechanism of carbon-hydrogen bond breakage by the heterotetrameric sarcosine oxidase of Arthrobacter sp. 1-IN.

Authors:  R J Harris; R Meskys; M J Sutcliffe; N S Scrutton
Journal:  Biochemistry       Date:  2000-02-15       Impact factor: 3.162

4.  Site-directed mutagenesis of active site residues of phosphite dehydrogenase.

Authors:  Ryan Woodyer; Joshua L Wheatley; Heather A Relyea; Stacey Rimkus; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2005-03-29       Impact factor: 3.162

5.  Oxygen- and temperature-dependent kinetic isotope effects in choline oxidase: correlating reversible hydride transfer with environmentally enhanced tunneling.

Authors:  Fan Fan; Giovanni Gadda
Journal:  J Am Chem Soc       Date:  2005-12-21       Impact factor: 15.419

6.  An internal equilibrium preorganizes the enzyme-substrate complex for hydride tunneling in choline oxidase.

Authors:  Fan Fan; Giovanni Gadda
Journal:  Biochemistry       Date:  2007-05-02       Impact factor: 3.162

7.  Molecular genetic analysis of phosphite and hypophosphite oxidation by Pseudomonas stutzeri WM88.

Authors:  W W Metcalf; R S Wolfe
Journal:  J Bacteriol       Date:  1998-11       Impact factor: 3.490

8.  Hydrogen tunneling in peptidylglycine alpha-hydroxylating monooxygenase.

Authors:  Wilson A Francisco; Michael J Knapp; Ninian J Blackburn; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2002-07-17       Impact factor: 15.419

9.  Biocatalytic Routes to Lactone Monomers for Polymer Production.

Authors:  Hanan L Messiha; Syed T Ahmed; Vijaykumar Karuppiah; Reynier Suardíaz; Gabriel A Ascue Avalos; Natalie Fey; Stephen Yeates; Helen S Toogood; Adrian J Mulholland; Nigel S Scrutton
Journal:  Biochemistry       Date:  2018-03-22       Impact factor: 3.162

10.  Investigation of the role of Arg301 identified in the X-ray structure of phosphite dehydrogenase.

Authors:  John E Hung; Emily J Fogle; Harry D Christman; Tyler W Johannes; Huimin Zhao; William W Metcalf; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2012-05-17       Impact factor: 3.162

View more
  1 in total

1.  Examining the Mechanism of Phosphite Dehydrogenase with Quantum Mechanical/Molecular Mechanical Free Energy Simulations.

Authors:  David R Stevens; Sharon Hammes-Schiffer
Journal:  Biochemistry       Date:  2020-02-14       Impact factor: 3.162

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.