Literature DB >> 17223710

Evidence for coupled motion and hydrogen tunneling of the reaction catalyzed by glutamate mutase.

Mou-Chi Cheng1, E Neil G Marsh.   

Abstract

Glutamate mutase is one of a group of adenosylcobalamin-dependent enzymes that catalyze unusual isomerizations that proceed through organic radical intermediates generated by homolytic fission of the coenzyme's unique cobalt-carbon bond. These enzymes are part of a larger family of enzymes that catalyze radical chemistry in which a key step is the abstraction of a hydrogen atom from an otherwise inert substrate. To gain insight into the mechanism of hydrogen transfer, we previously used pre-steady-state, rapid-quench techniques to measure the alpha-secondary tritium kinetic and equilibrium isotope effects associated with the formation of 5'-deoxyadenosine when glutamate mutase was reacted with [5'-(3)H]adenosylcobalamin and L-glutamate. We showed that both the kinetic and equilibrium isotope effects are large and inverse, 0.76 and 0.72, respectively. We have now repeated these measurements using glutamate deuterated in the position of hydrogen abstraction. The effect of introducing a primary deuterium kinetic isotope effect on the hydrogen transfer step is to reduce the magnitude of the secondary kinetic isotope effect to a value close to unity, 1.05 +/- 0.08, whereas the equilibrium isotope effect is unchanged. The significant reduction in the secondary kinetic isotope effect is consistent with motions of the 5'-hydrogen atoms being coupled in the transition state to the motion of the hydrogen undergoing transfer, in a reaction that involves a large degree of quantum tunneling.

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Year:  2007        PMID: 17223710      PMCID: PMC2518312          DOI: 10.1021/bi0616908

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  30 in total

1.  Review Article Coenzyme-B(12)-Dependent Glutamate Mutase.

Authors: 
Journal:  Bioorg Chem       Date:  2000-06       Impact factor: 5.275

2.  Radical Shuttling in a Protein: Ribose Pseudorotation Controls Alkyl-Radical Transfer in the Coenzyme B(12) Dependent Enzyme Glutamate Mutase This work was supported by the Österreichische Akademie der Wissenschaften (APART fellowship 614), the Österreichische Fonds zur Förderung der wissenschaftlichen Forschung (FWF-project 11599), and the European Commission (TMR project number ERB 4061 PL 95-0307). Crystallographic data were collected at the EMBL-beamline BW7B at DESY in Hamburg, Germany. We thank the beamline scientists for their assistance, and Ingrid Dreveny, Günter Gartler, Gerwald Jogl, and Oliver Sauer for their help during data collection. This research emerged from a collaboration with Prof. W. Buckel (Marburg) who supplied us with clones of the glutamate mutase proteins.

Authors:  Karl Gruber; Riikka Reitzer; Christoph Kratky
Journal:  Angew Chem Int Ed Engl       Date:  2001-09-17       Impact factor: 15.336

Review 3.  Adenosylcobalamin-dependent isomerases: new insights into structure and mechanism.

Authors:  E N Marsh; C L Drennan
Journal:  Curr Opin Chem Biol       Date:  2001-10       Impact factor: 8.822

Review 4.  Radical mechanisms of enzymatic catalysis.

Authors:  P A Frey
Journal:  Annu Rev Biochem       Date:  2001       Impact factor: 23.643

Review 5.  Radical peregrinations catalyzed by coenzyme B12-dependent enzymes.

Authors:  R Banerjee
Journal:  Biochemistry       Date:  2001-05-29       Impact factor: 3.162

Review 6.  Radical carbon skeleton rearrangements: catalysis by coenzyme B12-dependent mutases.

Authors:  Ruma Banerjee
Journal:  Chem Rev       Date:  2003-06       Impact factor: 60.622

7.  Evidence that cobalt-carbon bond homolysis is coupled to hydrogen atom abstraction from substrate in methylmalonyl-CoA mutase.

Authors:  R Padmakumar; R Padmakumar; R Banerjee
Journal:  Biochemistry       Date:  1997-03-25       Impact factor: 3.162

8.  Studies on the catalysis of carbon-cobalt bond homolysis by ribonucleoside triphosphate reductase: evidence for concerted carbon-cobalt bond homolysis and thiyl radical formation.

Authors:  S S Licht; S Booker; J Stubbe
Journal:  Biochemistry       Date:  1999-01-26       Impact factor: 3.162

9.  Adenosylcobalamin-dependent glutamate mutase: examination of substrate and coenzyme binding in an engineered fusion protein possessing simplified subunit structure and kinetic properties.

Authors:  H P Chen; E N Marsh
Journal:  Biochemistry       Date:  1997-12-02       Impact factor: 3.162

10.  Enzyme dynamics and hydrogen tunnelling in a thermophilic alcohol dehydrogenase.

Authors:  A Kohen; R Cannio; S Bartolucci; J P Klinman
Journal:  Nature       Date:  1999-06-03       Impact factor: 49.962

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  8 in total

1.  Entropic origin of cobalt-carbon bond cleavage catalysis in adenosylcobalamin-dependent ethanolamine ammonia-lyase.

Authors:  Miao Wang; Kurt Warncke
Journal:  J Am Chem Soc       Date:  2013-10-01       Impact factor: 15.419

2.  Hydrogen tunneling in adenosylcobalamin-dependent glutamate mutase: evidence from intrinsic kinetic isotope effects measured by intramolecular competition.

Authors:  Miri Yoon; Hangtian Song; Kristina Håkansson; E Neil G Marsh
Journal:  Biochemistry       Date:  2010-04-13       Impact factor: 3.162

3.  Update 1 of: Tunneling and dynamics in enzymatic hydride transfer.

Authors:  Zachary D Nagel; Judith P Klinman
Journal:  Chem Rev       Date:  2010-12-08       Impact factor: 60.622

Review 4.  Adenosyl radical: reagent and catalyst in enzyme reactions.

Authors:  E Neil G Marsh; Dustin P Patterson; Lei Li
Journal:  Chembiochem       Date:  2010-03-22       Impact factor: 3.164

Review 5.  Adenosylcobalamin enzymes: theory and experiment begin to converge.

Authors:  E Neil G Marsh; Gabriel D Román Meléndez
Journal:  Biochim Biophys Acta       Date:  2012-04-03

6.  Probing reversible chemistry in coenzyme B12 -dependent ethanolamine ammonia lyase with kinetic isotope effects.

Authors:  Alex R Jones; Julius Rentergent; Nigel S Scrutton; Sam Hay
Journal:  Chemistry       Date:  2015-05-07       Impact factor: 5.236

7.  Mechanism of radical-based catalysis in the reaction catalyzed by adenosylcobalamin-dependent ornithine 4,5-aminomutase.

Authors:  Kirsten R Wolthers; Stephen E J Rigby; Nigel S Scrutton
Journal:  J Biol Chem       Date:  2008-10-22       Impact factor: 5.157

8.  Role of active site residues in promoting cobalt-carbon bond homolysis in adenosylcobalamin-dependent mutases revealed through experiment and computation.

Authors:  Gabriel D Román-Meléndez; Patrick von Glehn; Jeremy N Harvey; Adrian J Mulholland; E Neil G Marsh
Journal:  Biochemistry       Date:  2013-12-20       Impact factor: 3.162

  8 in total

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