Literature DB >> 20188667

Chaperoning of a replicative polymerase onto a newly assembled DNA-bound sliding clamp by the clamp loader.

Christopher D Downey1, Charles S McHenry.   

Abstract

Cellular replicases contain multiprotein ATPases that load sliding clamp processivity factors onto DNA. We reveal an additional role for the DnaX clamp loader: chaperoning of the replicative polymerase onto a clamp newly bound to DNA. We show that chaperoning confers distinct advantages, including marked acceleration of initiation complex formation. We reveal a requirement for the tau form of DnaX complex to relieve inhibition by single-stranded DNA binding protein during initiation complex formation. We propose that, after loading beta(2), DnaX complex preserves an SSB-free segment of DNA immediately downstream of the primer terminus and chaperones Pol III into that position, preventing competition by SSB. The C-terminal tail of SSB stimulates reactions catalyzed by tau-containing DnaX complexes through a contact distinct from the contact involving the chi subunit. Chaperoning of Pol III by the DnaX complex provides a molecular explanation for how initiation complexes form when supported by the nonhydrolyzed analog ATPgammaS. Copyright 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20188667      PMCID: PMC2830912          DOI: 10.1016/j.molcel.2010.01.013

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  45 in total

1.  ATP binding to the Escherichia coli clamp loader powers opening of the ring-shaped clamp of DNA polymerase III holoenzyme.

Authors:  M M Hingorani; M O'Donnell
Journal:  J Biol Chem       Date:  1998-09-18       Impact factor: 5.157

2.  tau couples the leading- and lagging-strand polymerases at the Escherichia coli DNA replication fork.

Authors:  S Kim; H G Dallmann; C S McHenry; K J Marians
Journal:  J Biol Chem       Date:  1996-08-30       Impact factor: 5.157

3.  The interaction between helicase and primase sets the replication fork clock.

Authors:  K Tougu; K J Marians
Journal:  J Biol Chem       Date:  1996-08-30       Impact factor: 5.157

4.  Tau protects beta in the leading-strand polymerase complex at the replication fork.

Authors:  S Kim; H G Dallmann; C S McHenry; K J Marians
Journal:  J Biol Chem       Date:  1996-02-23       Impact factor: 5.157

5.  In vivo assembly of the tau-complex of the DNA polymerase III holoenzyme expressed from a five-gene artificial operon. Cleavage of the tau-complex to form a mixed gamma-tau-complex by the OmpT protease.

Authors:  A E Pritchard; H G Dallmann; C S McHenry
Journal:  J Biol Chem       Date:  1996-04-26       Impact factor: 5.157

6.  Dual role of the 44/62 protein as a matchmaker protein and DNA polymerase chaperone during assembly of the bacteriophage T4 holoenzyme complex.

Authors:  B F Kaboord; S J Benkovic
Journal:  Biochemistry       Date:  1996-01-23       Impact factor: 3.162

7.  Devoted to the lagging strand-the subunit of DNA polymerase III holoenzyme contacts SSB to promote processive elongation and sliding clamp assembly.

Authors:  Z Kelman; A Yuzhakov; J Andjelkovic; M O'Donnell
Journal:  EMBO J       Date:  1998-04-15       Impact factor: 11.598

8.  Biotin tagging deletion analysis of domain limits involved in protein-macromolecular interactions. Mapping the tau binding domain of the DNA polymerase III alpha subunit.

Authors:  D R Kim; C S McHenry
Journal:  J Biol Chem       Date:  1996-08-23       Impact factor: 5.157

9.  The chi psi subunits of DNA polymerase III holoenzyme bind to single-stranded DNA-binding protein (SSB) and facilitate replication of an SSB-coated template.

Authors:  B P Glover; C S McHenry
Journal:  J Biol Chem       Date:  1998-09-04       Impact factor: 5.157

10.  The mechanism of ATP-dependent primer-template recognition by a clamp loader complex.

Authors:  Kyle R Simonetta; Steven L Kazmirski; Eric R Goedken; Aaron J Cantor; Brian A Kelch; Randall McNally; Steven N Seyedin; Debora L Makino; Mike O'Donnell; John Kuriyan
Journal:  Cell       Date:  2009-05-15       Impact factor: 41.582

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  29 in total

1.  Escherichia coli DNA polymerase IV (Pol IV), but not Pol II, dynamically switches with a stalled Pol III* replicase.

Authors:  Justin M H Heltzel; Robert W Maul; David W Wolff; Mark D Sutton
Journal:  J Bacteriol       Date:  2012-04-27       Impact factor: 3.490

2.  Multiple C-terminal tails within a single E. coli SSB homotetramer coordinate DNA replication and repair.

Authors:  Edwin Antony; Elizabeth Weiland; Quan Yuan; Carol M Manhart; Binh Nguyen; Alexander G Kozlov; Charles S McHenry; Timothy M Lohman
Journal:  J Mol Biol       Date:  2013-09-07       Impact factor: 5.469

3.  The interplay of primer-template DNA phosphorylation status and single-stranded DNA binding proteins in directing clamp loaders to the appropriate polarity of DNA.

Authors:  Jaclyn N Hayner; Lauren G Douma; Linda B Bloom
Journal:  Nucleic Acids Res       Date:  2014-08-26       Impact factor: 16.971

4.  Insights into Okazaki fragment synthesis by the T4 replisome: the fate of lagging-strand holoenzyme components and their influence on Okazaki fragment size.

Authors:  Danqi Chen; Hongjun Yue; Michelle M Spiering; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2013-05-31       Impact factor: 5.157

5.  Structure of the SSB-DNA polymerase III interface and its role in DNA replication.

Authors:  Aimee H Marceau; Soon Bahng; Shawn C Massoni; Nicholas P George; Steven J Sandler; Kenneth J Marians; James L Keck
Journal:  EMBO J       Date:  2011-08-19       Impact factor: 11.598

6.  Polymerase chaperoning and multiple ATPase sites enable the E. coli DNA polymerase III holoenzyme to rapidly form initiation complexes.

Authors:  Christopher D Downey; Elliott Crooke; Charles S McHenry
Journal:  J Mol Biol       Date:  2011-07-28       Impact factor: 5.469

7.  DNA Polymerase α Subunit Residues and Interactions Required for Efficient Initiation Complex Formation Identified by a Genetic Selection.

Authors:  Janet C Lindow; Paul R Dohrmann; Charles S McHenry
Journal:  J Biol Chem       Date:  2015-05-18       Impact factor: 5.157

8.  Only one ATP-binding DnaX subunit is required for initiation complex formation by the Escherichia coli DNA polymerase III holoenzyme.

Authors:  Anna Wieczorek; Christopher D Downey; H Garry Dallmann; Charles S McHenry
Journal:  J Biol Chem       Date:  2010-07-30       Impact factor: 5.157

9.  Polymerase exchange on single DNA molecules reveals processivity clamp control of translesion synthesis.

Authors:  James E Kath; Slobodan Jergic; Justin M H Heltzel; Deena T Jacob; Nicholas E Dixon; Mark D Sutton; Graham C Walker; Joseph J Loparo
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-13       Impact factor: 11.205

Review 10.  New insights into replisome fluidity during chromosome replication.

Authors:  Isabel Kurth; Mike O'Donnell
Journal:  Trends Biochem Sci       Date:  2012-11-12       Impact factor: 13.807

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