Literature DB >> 8547244

Dual role of the 44/62 protein as a matchmaker protein and DNA polymerase chaperone during assembly of the bacteriophage T4 holoenzyme complex.

B F Kaboord1, S J Benkovic.   

Abstract

Processive DNA synthesis in the bacteriophage T4 system requires the formation of a holoenzyme complex composed of the T4 DNA polymerase and the 44/62 and 45 accessory proteins. While ATP hydrolysis by the 44/62 protein is essential for holoenzyme formation, the role of the sliding clamp or processivity factor is attributed to the 45 protein. Beyond the need for ATP hydrolysis, the exact role of the 44/62 protein in complex assembly has not been clearly defined. In this paper, we have investigated the kinetics of complex assembly in the presence of both saturating and substoichiometric concentrations of the 44/62 protein. Under saturating conditions, complex assembly is 100% efficient, with all of the polymerase bound in a processive complex. Under conditions of limiting 44/62 protein, the 44/62 protein can act catalytically to assemble the 45 protein and polymerase into a productive complex. However, kinetic simulations indicate that a significant fraction of polymerase is sequestered in a nonproductive complex with the 45 protein. Thus, a second role for the 44/62 protein during complex assembly is that of a chaperone protein to ensure productive pol.45.DNA complex formation. We have also investigated the stability of the 45 protein on the DNA. The off rate of 0.003 s-1 for the 45 protein closely parallels that of the holoenzyme complex. Therefore, disassembly of the complex appears to involve the coordinated dissociation of both the 45 protein and the polymerase from the DNA.

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Year:  1996        PMID: 8547244     DOI: 10.1021/bi9520747

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

1.  Creating a dynamic picture of the sliding clamp during T4 DNA polymerase holoenzyme assembly by using fluorescence resonance energy transfer.

Authors:  M A Trakselis; S C Alley; E Abel-Santos; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

2.  Single-molecule investigation of the T4 bacteriophage DNA polymerase holoenzyme: multiple pathways of holoenzyme formation.

Authors:  R Derike Smiley; Zhihao Zhuang; Stephen J Benkovic; Gordon G Hammes
Journal:  Biochemistry       Date:  2006-07-04       Impact factor: 3.162

3.  RNA primer handoff in bacteriophage T4 DNA replication: the role of single-stranded DNA-binding protein and polymerase accessory proteins.

Authors:  Scott W Nelson; Ravindra Kumar; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2008-05-28       Impact factor: 5.157

4.  Chaperoning of a replicative polymerase onto a newly assembled DNA-bound sliding clamp by the clamp loader.

Authors:  Christopher D Downey; Charles S McHenry
Journal:  Mol Cell       Date:  2010-02-26       Impact factor: 17.970

5.  The carboxyl terminus of the bacteriophage T4 DNA polymerase is required for holoenzyme complex formation.

Authors:  A J Berdis; P Soumillion; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-12       Impact factor: 11.205

Review 6.  Replication clamps and clamp loaders.

Authors:  Mark Hedglin; Ravindra Kumar; Stephen J Benkovic
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-04-01       Impact factor: 10.005

Review 7.  Bacteriophage T4 genome.

Authors:  Eric S Miller; Elizabeth Kutter; Gisela Mosig; Fumio Arisaka; Takashi Kunisawa; Wolfgang Rüger
Journal:  Microbiol Mol Biol Rev       Date:  2003-03       Impact factor: 11.056

8.  Activation of RNA polymerase II by topologically linked DNA-tracking proteins.

Authors:  M Ouhammouch; M H Sayre; J T Kadonaga; E P Geiduschek
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-24       Impact factor: 11.205

9.  Efficiency and frequency of translational coupling between the bacteriophage T4 clamp loader genes.

Authors:  M Y Torgov; D M Janzen; M K Reddy
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490

10.  Analysis of the role of PCNA-DNA contacts during clamp loading.

Authors:  Randall McNally; Gregory D Bowman; Eric R Goedken; Mike O'Donnell; John Kuriyan
Journal:  BMC Struct Biol       Date:  2010-01-30
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