Literature DB >> 9545254

Devoted to the lagging strand-the subunit of DNA polymerase III holoenzyme contacts SSB to promote processive elongation and sliding clamp assembly.

Z Kelman1, A Yuzhakov, J Andjelkovic, M O'Donnell.   

Abstract

Escherichia coli DNA polymerase III holoenzyme contains 10 different subunits which assort into three functional components: a core catalytic unit containing DNA polymerase activity, the beta sliding clamp that encircles DNA for processive replication, and a multisubunit clamp loader apparatus called gamma complex that uses ATP to assemble the beta clamp onto DNA. We examine here the function of the psi subunit of the gamma complex clamp loader. Omission of psi from the holoenzyme prevents contact with single-stranded DNA-binding protein (SSB) and lowers the efficiency of clamp loading and chain elongation under conditions of elevated salt. We also show that the product of a classic point mutant of SSB, SSB-113, lacks strong affinity for psi and is defective in promoting clamp loading and processive replication at elevated ionic strength. SSB-113 carries a single amino acid replacement at the penultimate residue of the C-terminus, indicating the C-terminus as a site of interaction with psi. Indeed, a peptide of the 15 C-terminal residues of SSB is sufficient to bind to psi. These results establish a role for the psi subunit in contacting SSB, thus enhancing the clamp loading and processivity of synthesis of the holoenzyme, presumably by helping to localize the holoenzyme to sites of SSB-coated ssDNA.

Entities:  

Mesh:

Substances:

Year:  1998        PMID: 9545254      PMCID: PMC1170586          DOI: 10.1093/emboj/17.8.2436

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  63 in total

1.  The deoxyribonucleic acid unwinding protein of Escherichia coli. Properties and functions in replication.

Authors:  J H Weiner; L L Bertsch; A Kornberg
Journal:  J Biol Chem       Date:  1975-03-25       Impact factor: 5.157

2.  Measurement of protein-binding phenomena by gel filtration.

Authors:  J P HUMMEL; W J DREYER
Journal:  Biochim Biophys Acta       Date:  1962-10-08

3.  Properties of the Escherichia coli DNA-binding (unwinding) protein interaction with nucleolytic enzymes and DNA.

Authors:  I J Molineux; M L Gefter
Journal:  J Mol Biol       Date:  1975-11-15       Impact factor: 5.469

4.  The gene 59 protein of bacteriophage T4. Characterization of protein-protein interactions with gene 32 protein, the T4 single-stranded DNA binding protein.

Authors:  S W Morrical; H T Beernink; A Dash; K Hempstead
Journal:  J Biol Chem       Date:  1996-08-16       Impact factor: 5.157

5.  DNA polymerase III of Escherichia coli. Purification and identification of subunits.

Authors:  C S McHenry; W Crow
Journal:  J Biol Chem       Date:  1979-03-10       Impact factor: 5.157

6.  In vitro and in vivo function of the C-terminus of Escherichia coli single-stranded DNA binding protein.

Authors:  U Curth; J Genschel; C Urbanke; J Greipel
Journal:  Nucleic Acids Res       Date:  1996-07-15       Impact factor: 16.971

7.  Mutant single-strand binding protein of Escherichia coli: genetic and physiological characterization.

Authors:  J Glassberg; R R Meyer; A Kornberg
Journal:  J Bacteriol       Date:  1979-10       Impact factor: 3.490

8.  T4 gene 32 protein trypsin-generated fragments. Fluorescence measurement of DNA-binding parameters.

Authors:  E K Spicer; K R Williams; W H Konigsberg
Journal:  J Biol Chem       Date:  1979-07-25       Impact factor: 5.157

9.  Properties of the Escherichia coli in DNA binding (unwinding) protein: interaction with DNA polymerase and DNA.

Authors:  I J Molineux; M L Gefter
Journal:  Proc Natl Acad Sci U S A       Date:  1974-10       Impact factor: 11.205

10.  A mechanism of duplex DNA replication revealed by enzymatic studies of phage phi X174: catalytic strand separation in advance of replication.

Authors:  J F Scott; S Eisenberg; L L Bertsch; A Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  1977-01       Impact factor: 11.205

View more
  81 in total

1.  Impairment of lagging strand synthesis triggers the formation of a RuvABC substrate at replication forks.

Authors:  M J Flores; H Bierne; S D Ehrlich; B Michel
Journal:  EMBO J       Date:  2001-02-01       Impact factor: 11.598

2.  Differential functional behavior of viral phi29, Nf and GA-1 SSB proteins.

Authors:  I Gascón; J M Lázaro; M Salas
Journal:  Nucleic Acids Res       Date:  2000-05-15       Impact factor: 16.971

Review 3.  Rescue of arrested replication forks by homologous recombination.

Authors:  B Michel; M J Flores; E Viguera; G Grompone; M Seigneur; V Bidnenko
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

Review 4.  Managing DNA polymerases: coordinating DNA replication, DNA repair, and DNA recombination.

Authors:  M D Sutton; G C Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

5.  Allosteric effects of SSB C-terminal tail on assembly of E. coli RecOR proteins.

Authors:  Min Kyung Shinn; Alexander G Kozlov; Timothy M Lohman
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

6.  Multiple C-terminal tails within a single E. coli SSB homotetramer coordinate DNA replication and repair.

Authors:  Edwin Antony; Elizabeth Weiland; Quan Yuan; Carol M Manhart; Binh Nguyen; Alexander G Kozlov; Charles S McHenry; Timothy M Lohman
Journal:  J Mol Biol       Date:  2013-09-07       Impact factor: 5.469

7.  The interplay of primer-template DNA phosphorylation status and single-stranded DNA binding proteins in directing clamp loaders to the appropriate polarity of DNA.

Authors:  Jaclyn N Hayner; Lauren G Douma; Linda B Bloom
Journal:  Nucleic Acids Res       Date:  2014-08-26       Impact factor: 16.971

Review 8.  Loading clamps for DNA replication and repair.

Authors:  Linda B Bloom
Journal:  DNA Repair (Amst)       Date:  2009-02-11

Review 9.  SSB as an organizer/mobilizer of genome maintenance complexes.

Authors:  Robert D Shereda; Alexander G Kozlov; Timothy M Lohman; Michael M Cox; James L Keck
Journal:  Crit Rev Biochem Mol Biol       Date:  2008 Sep-Oct       Impact factor: 8.250

10.  Interaction with Single-stranded DNA-binding Protein Stimulates Escherichia coli Ribonuclease HI Enzymatic Activity.

Authors:  Christine Petzold; Aimee H Marceau; Katherine H Miller; Susan Marqusee; James L Keck
Journal:  J Biol Chem       Date:  2015-04-22       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.