Literature DB >> 20161324

Computer-aided Prognosis of Neuroblastoma on Whole-slide Images: Classification of Stromal Development.

O Sertel1, J Kong, H Shimada, U V Catalyurek, J H Saltz, M N Gurcan.   

Abstract

We are developing a computer-aided prognosis system for neuroblastoma (NB), a cancer of the nervous system and one of the most malignant tumors affecting children. Histopathological examination is an important stage for further treatment planning in routine clinical diagnosis of NB. According to the International Neuroblastoma Pathology Classification (the Shimada system), NB patients are classified into favorable and unfavorable histology based on the tissue morphology. In this study, we propose an image analysis system that operates on digitized H&E stained whole-slide NB tissue samples and classifies each slide as either stroma-rich or stroma-poor based on the degree of Schwannian stromal development. Our statistical framework performs the classification based on texture features extracted using co-occurrence statistics and local binary patterns. Due to the high resolution of digitized whole-slide images, we propose a multi-resolution approach that mimics the evaluation of a pathologist such that the image analysis starts from the lowest resolution and switches to higher resolutions when necessary. We employ an offine feature selection step, which determines the most discriminative features at each resolution level during the training step. A modified k-nearest neighbor classifier is used to determine the confidence level of the classification to make the decision at a particular resolution level. The proposed approach was independently tested on 43 whole-slide samples and provided an overall classification accuracy of 88.4%.

Entities:  

Year:  2009        PMID: 20161324      PMCID: PMC2678741          DOI: 10.1016/j.patcog.2008.08.027

Source DB:  PubMed          Journal:  Pattern Recognit        ISSN: 0031-3203            Impact factor:   7.740


  12 in total

1.  Potential contribution of computer-aided detection to the sensitivity of screening mammography.

Authors:  L J Warren Burhenne; S A Wood; C J D'Orsi; S A Feig; D B Kopans; K F O'Shaughnessy; E A Sickles; L Tabar; C J Vyborny; R A Castellino
Journal:  Radiology       Date:  2000-05       Impact factor: 11.105

2.  Image analysis of low magnification images of fine needle aspirates of the breast produces useful discrimination between benign and malignant cases.

Authors:  S S Cross; J P Bury; T J Stephenson; R F Harrison
Journal:  Cytopathology       Date:  1997-08       Impact factor: 2.073

3.  Image mining for investigative pathology using optimized feature extraction and data fusion.

Authors:  Wenjin Chen; Peter Meer; Bogdan Georgescu; Wei He; Lauri A Goodell; David J Foran
Journal:  Comput Methods Programs Biomed       Date:  2005-07       Impact factor: 5.428

4.  The International Neuroblastoma Pathology Classification (the Shimada system).

Authors:  H Shimada; I M Ambros; L P Dehner; J Hata; V V Joshi; B Roald; D O Stram; R B Gerbing; J N Lukens; K K Matthay; R P Castleberry
Journal:  Cancer       Date:  1999-07-15       Impact factor: 6.860

5.  Terminology and morphologic criteria of neuroblastic tumors: recommendations by the International Neuroblastoma Pathology Committee.

Authors:  H Shimada; I M Ambros; L P Dehner; J Hata; V V Joshi; B Roald
Journal:  Cancer       Date:  1999-07-15       Impact factor: 6.860

6.  Stroma classification for neuroblastoma on graphics processors.

Authors:  Antonio Ruiz; Olcay Sertel; Manuel Ujaldón; Umit Catalyurek; Joel Saltz; Metin N Gurcan
Journal:  Int J Data Min Bioinform       Date:  2009       Impact factor: 0.667

7.  Multifeature prostate cancer diagnosis and Gleason grading of histological images.

Authors:  Ali Tabesh; Mikhail Teverovskiy; Ho-Yuen Pang; Vinay P Kumar; David Verbel; Angeliki Kotsianti; Olivier Saidi
Journal:  IEEE Trans Med Imaging       Date:  2007-10       Impact factor: 10.048

8.  Image analysis for neuroblastoma classification: segmentation of cell nuclei.

Authors:  Metin N Gurcan; Tony Pan; Hiro Shimada; Joel Saltz
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2006

9.  Multiwavelet grading of pathological images of prostate.

Authors:  Kourosh Jafari-Khouzani; Hamid Soltanian-Zadeh
Journal:  IEEE Trans Biomed Eng       Date:  2003-06       Impact factor: 4.538

10.  The problems and promise of central pathology review: development of a standardized procedure for the Children's Oncology Group.

Authors:  Lisa A Teot; Richard Sposto; Anita Khayat; Stephen Qualman; Gregory Reaman; David Parham
Journal:  Pediatr Dev Pathol       Date:  2007 May-Jun
View more
  50 in total

1.  Prediction of Heart Transplant Rejection Using Histopathological Whole-Slide Imaging.

Authors:  Adrienne E Dooley; Li Tong; Shriprasad R Deshpande; May D Wang
Journal:  IEEE EMBS Int Conf Biomed Health Inform       Date:  2018-04-09

2.  Content-based microscopic image retrieval system for multi-image queries.

Authors:  Hatice Cinar Akakin; Metin N Gurcan
Journal:  IEEE Trans Inf Technol Biomed       Date:  2012-01-31

3.  Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows.

Authors:  Luis F R Taveira; Tahsin Kurc; Alba C M A Melo; Jun Kong; Erich Bremer; Joel H Saltz; George Teodoro
Journal:  J Digit Imaging       Date:  2019-06       Impact factor: 4.056

Review 4.  Histopathological image analysis: a review.

Authors:  Metin N Gurcan; Laura E Boucheron; Ali Can; Anant Madabhushi; Nasir M Rajpoot; B Yener
Journal:  IEEE Rev Biomed Eng       Date:  2009-10-30

5.  Advancing Clinicopathologic Diagnosis of High-risk Neuroblastoma Using Computerized Image Analysis and Proteomic Profiling.

Authors:  M Khalid Khan Niazi; Jonathan H Chung; Katherine J Heaton-Johnson; Daniel Martinez; Raquel Castellanos; Meredith S Irwin; Stephen R Master; Bruce R Pawel; Metin N Gurcan; Daniel A Weiser
Journal:  Pediatr Dev Pathol       Date:  2017-04-18

6.  Histology image analysis for carcinoma detection and grading.

Authors:  Lei He; L Rodney Long; Sameer Antani; George R Thoma
Journal:  Comput Methods Programs Biomed       Date:  2012-03-20       Impact factor: 5.428

Review 7.  An Assessment of Imaging Informatics for Precision Medicine in Cancer.

Authors:  C Chennubhotla; L P Clarke; A Fedorov; D Foran; G Harris; E Helton; R Nordstrom; F Prior; D Rubin; J H Saltz; E Shalley; A Sharma
Journal:  Yearb Med Inform       Date:  2017-09-11

Review 8.  Breast cancer cell nuclei classification in histopathology images using deep neural networks.

Authors:  Yangqin Feng; Lei Zhang; Zhang Yi
Journal:  Int J Comput Assist Radiol Surg       Date:  2017-08-31       Impact factor: 2.924

9.  A multi-resolution textural approach to diagnostic neuropathology reporting.

Authors:  Mohammad Faizal Ahmad Fauzi; Hamza Numan Gokozan; Brad Elder; Vinay K Puduvalli; Christopher R Pierson; José Javier Otero; Metin N Gurcan
Journal:  J Neurooncol       Date:  2015-08-09       Impact factor: 4.130

10.  An Efficient Computational Framework for the Analysis of Whole Slide Images: Application to Follicular Lymphoma Immunohistochemistry.

Authors:  Siddharth Samsi; Ashok K Krishnamurthy; Metin N Gurcan
Journal:  J Comput Sci       Date:  2012-03-06
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.