Literature DB >> 24955007

The changing epitome of species identification - DNA barcoding.

M Ajmal Ali1, Gábor Gyulai2, Norbert Hidvégi2, Balázs Kerti2, Fahad M A Al Hemaid1, Arun K Pandey3, Joongku Lee4.   

Abstract

The discipline taxonomy (the science of naming and classifying organisms, the original bioinformatics and a basis for all biology) is fundamentally important in ensuring the quality of life of future human generation on the earth; yet over the past few decades, the teaching and research funding in taxonomy have declined because of its classical way of practice which lead the discipline many a times to a subject of opinion, and this ultimately gave birth to several problems and challenges, and therefore the taxonomist became an endangered race in the era of genomics. Now taxonomy suddenly became fashionable again due to revolutionary approaches in taxonomy called DNA barcoding (a novel technology to provide rapid, accurate, and automated species identifications using short orthologous DNA sequences). In DNA barcoding, complete data set can be obtained from a single specimen irrespective to morphological or life stage characters. The core idea of DNA barcoding is based on the fact that the highly conserved stretches of DNA, either coding or non coding regions, vary at very minor degree during the evolution within the species. Sequences suggested to be useful in DNA barcoding include cytoplasmic mitochondrial DNA (e.g. cox1) and chloroplast DNA (e.g. rbcL, trnL-F, matK, ndhF, and atpB rbcL), and nuclear DNA (ITS, and house keeping genes e.g. gapdh). The plant DNA barcoding is now transitioning the epitome of species identification; and thus, ultimately helping in the molecularization of taxonomy, a need of the hour. The 'DNA barcodes' show promise in providing a practical, standardized, species-level identification tool that can be used for biodiversity assessment, life history and ecological studies, forensic analysis, and many more.

Entities:  

Keywords:  Biodiversity; Conservation genetics; DNA barcoding; Molecular markers; Plant taxonomy; Species identification

Year:  2014        PMID: 24955007      PMCID: PMC4061418          DOI: 10.1016/j.sjbs.2014.03.003

Source DB:  PubMed          Journal:  Saudi J Biol Sci        ISSN: 1319-562X            Impact factor:   4.219


  218 in total

1.  Molecular diversity of 5S-rRNA spacer domain in Fritillaria species revealed by PCR analysis.

Authors:  Z H Cai; P Li; T T Dong; K W Tsim
Journal:  Planta Med       Date:  1999-05       Impact factor: 3.352

Review 2.  NPS@: network protein sequence analysis.

Authors:  C Combet; C Blanchet; C Geourjon; G Deléage
Journal:  Trends Biochem Sci       Date:  2000-03       Impact factor: 13.807

Review 3.  Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation rates.

Authors:  J D Palmer; K L Adams; Y Cho; C L Parkinson; Y L Qiu; K Song
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

4.  The complete external transcribed spacer of 18S-26S rDNA: amplification and phylogenetic utility at low taxonomic levels in asteraceae and closely allied families.

Authors:  C R Linder; L R Goertzen; B V Heuvel; J Francisco-Ortega; R K Jansen
Journal:  Mol Phylogenet Evol       Date:  2000-02       Impact factor: 4.286

Review 5.  Contributions of plant molecular systematics to studies of molecular evolution.

Authors:  E D Soltis; P S Soltis
Journal:  Plant Mol Biol       Date:  2000-01       Impact factor: 4.076

6.  The root of angiosperm phylogeny inferred from duplicate phytochrome genes.

Authors:  S Mathews; M J Donoghue
Journal:  Science       Date:  1999-10-29       Impact factor: 47.728

7.  Phylogenetic utility of the external transcribed spacer (ETS) of 18S-26S rDNA: congruence of ETS and ITS trees of Calycadenia (Compositae).

Authors:  B G Baldwin; S Markos
Journal:  Mol Phylogenet Evol       Date:  1998-12       Impact factor: 4.286

8.  Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence.

Authors:  R Kalendar; J Tanskanen; S Immonen; E Nevo; A H Schulman
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

9.  Phylogenetic relationship of six Glycyrrhiza species based on rbcL sequences and chemical constituents.

Authors:  H Hayashi; N Hosono; M Kondo; N Hiraoka; Y Ikeshiro; M Shibano; G Kusano; H Yamamoto; T Tanaka; K Inoue
Journal:  Biol Pharm Bull       Date:  2000-05       Impact factor: 2.233

10.  Molecular authentication of Panax species.

Authors:  F Ngan; P Shaw; P But; J Wang
Journal:  Phytochemistry       Date:  1999-03       Impact factor: 4.072

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  20 in total

1.  Discriminatory power of rbcL barcode locus for authentication of some of United Arab Emirates (UAE) native plants.

Authors:  Lina Maloukh; Alagappan Kumarappan; Mohammad Jarrar; Jawad Salehi; Houssam El-Wakil; T V Rajya Lakshmi
Journal:  3 Biotech       Date:  2017-06-08       Impact factor: 2.406

2.  ITS2: An Ideal DNA Barcode for the Arid Medicinal Plant Rhazya Stricta.

Authors:  Samia A Khan; Mohamed N Baeshen; Hassan A Ramadan; Nabih A Baeshen
Journal:  Pharmaceut Med       Date:  2019-02

3.  A Novel PCR-Based Approach for Rapid Identification of Morchella sextelata Using Species-Specific Primers.

Authors:  Qianhui Shen; Chunhong Li; Meixia Xie; Wenjia Li; Zhengming Qian; Ji Zhang
Journal:  Curr Microbiol       Date:  2019-12-04       Impact factor: 2.188

4.  Botanical Integrity: The Importance of the Integration of Chemical, Biological, and Botanical Analyses, and the Role of DNA Barcoding.

Authors:  Charlotte Simmler; Shao-Nong Chen; Jeff Anderson; David C Lankin; Rasika Phansalkar; Elizabeth Krause; Birgit Dietz; Judy L Bolton; Dejan Nikolic; Richard B van Breemen; Guido F Pauli
Journal:  HerbalGram       Date:  2015

Review 5.  Role of DNA barcoding in marine biodiversity assessment and conservation: An update.

Authors:  Subrata Trivedi; Abdulhadi A Aloufi; Abid A Ansari; Sankar K Ghosh
Journal:  Saudi J Biol Sci       Date:  2015-01-12       Impact factor: 4.219

6.  Detection of Ophiocordyceps sinensis and Its Common Adulterates Using Species-Specific Primers.

Authors:  Yang Liu; Xiao-Yue Wang; Zi-Tong Gao; Jian-Ping Han; Li Xiang
Journal:  Front Microbiol       Date:  2017-06-21       Impact factor: 5.640

Review 7.  Review: DNA Barcoding and Chromatography Fingerprints for the Authentication of Botanicals in Herbal Medicinal Products.

Authors:  Bashir Mohammed Abubakar; Faezah Mohd Salleh; Mohd Shahir Shamsir Omar; Alina Wagiran
Journal:  Evid Based Complement Alternat Med       Date:  2017-04-27       Impact factor: 2.629

8.  The marker choice: Unexpected resolving power of an unexplored CO1 region for layered DNA barcoding approaches.

Authors:  Jessica Rach; Tjard Bergmann; Omid Paknia; Rob DeSalle; Bernd Schierwater; Heike Hadrys
Journal:  PLoS One       Date:  2017-04-13       Impact factor: 3.240

9.  The first initiative of DNA barcoding of ornamental plants from Egypt and potential applications in horticulture industry.

Authors:  Hosam O Elansary; Muhammad Ashfaq; Hayssam M Ali; Kowiyou Yessoufou
Journal:  PLoS One       Date:  2017-02-15       Impact factor: 3.240

10.  [Heterogeneity of hematopoietic stem cell].

Authors:  Chen Chen; Sha Hao; Tao Cheng
Journal:  Zhonghua Xue Ye Xue Za Zhi       Date:  2015-10
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