Literature DB >> 20147751

Chemical inducers of targeted protein degradation.

Kanak Raina1, Craig M Crews.   

Abstract

The functions of many cellular proteins have been elucidated by selective gene inactivation and subsequent phenotypic analysis. For example, genetic mutations, gene knock-out generation, and the use of RNA interference to target mRNA for degradation can all result in decreased production of a specific protein, yielding informative cellular phenotypes. However, these techniques each have certain inherent limitations. This minireview focuses on the recent development of new approaches to study protein function at the post-translational level, namely chemical induction of targeted protein degradation.

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Year:  2010        PMID: 20147751      PMCID: PMC2856979          DOI: 10.1074/jbc.R109.078105

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  29 in total

1.  Expression profiling reveals off-target gene regulation by RNAi.

Authors:  Aimee L Jackson; Steven R Bartz; Janell Schelter; Sumire V Kobayashi; Julja Burchard; Mao Mao; Bin Li; Guy Cavet; Peter S Linsley
Journal:  Nat Biotechnol       Date:  2003-05-18       Impact factor: 54.908

2.  Degradation of target protein in living cells by small-molecule proteolysis inducer.

Authors:  Dong Zhang; Sun Hee Baek; Abby Ho; Kyungbo Kim
Journal:  Bioorg Med Chem Lett       Date:  2004-02-09       Impact factor: 2.823

3.  Efficient delivery of siRNA for inhibition of gene expression in postnatal mice.

Authors:  David L Lewis; James E Hagstrom; Aaron G Loomis; Jon A Wolff; Hans Herweijer
Journal:  Nat Genet       Date:  2002-07-29       Impact factor: 38.330

4.  Localization to the proteasome is sufficient for degradation.

Authors:  Daniel M Janse; Bernat Crosas; Daniel Finley; George M Church
Journal:  J Biol Chem       Date:  2004-03-23       Impact factor: 5.157

5.  Comparison of the three-dimensional structures of human, yeast, and oat ubiquitin.

Authors:  S Vijay-Kumar; C E Bugg; K D Wilkinson; R D Vierstra; P M Hatfield; W J Cook
Journal:  J Biol Chem       Date:  1987-05-05       Impact factor: 5.157

6.  Activation of the interferon system by short-interfering RNAs.

Authors:  Carol A Sledz; Michelle Holko; Michael J de Veer; Robert H Silverman; Bryan R G Williams
Journal:  Nat Cell Biol       Date:  2003-08-24       Impact factor: 28.824

7.  A strategy for the generation of conditional mutations by protein destabilization.

Authors:  E C Park; D Finley; J W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  1992-02-15       Impact factor: 11.205

8.  Conditional protein alleles using knockin mice and a chemical inducer of dimerization.

Authors:  Kryn Stankunas; J Henri Bayle; Jason E Gestwicki; Yun-Ming Lin; Thomas J Wandless; Gerald R Crabtree
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

9.  Development of Protacs to target cancer-promoting proteins for ubiquitination and degradation.

Authors:  Kathleen M Sakamoto; Kyung B Kim; Rati Verma; Andy Ransick; Bernd Stein; Craig M Crews; Raymond J Deshaies
Journal:  Mol Cell Proteomics       Date:  2003-10-02       Impact factor: 5.911

10.  RNA interference in adult mice.

Authors:  Anton P McCaffrey; Leonard Meuse; Thu-Thao T Pham; Douglas S Conklin; Gregory J Hannon; Mark A Kay
Journal:  Nature       Date:  2002-07-04       Impact factor: 49.962

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  29 in total

1.  Impact of linker length on the activity of PROTACs.

Authors:  Kedra Cyrus; Marie Wehenkel; Eun-Young Choi; Hyeong-Jun Han; Hyosung Lee; Hollie Swanson; Kyung-Bo Kim
Journal:  Mol Biosyst       Date:  2010-10-04

2.  Grand challenge commentary: Beyond discovery: probes that see, grab and poke.

Authors:  Joshua A Kritzer
Journal:  Nat Chem Biol       Date:  2010-12       Impact factor: 15.040

3.  Identification of hydrophobic tags for the degradation of stabilized proteins.

Authors:  Hyun Seop Tae; Thomas B Sundberg; Taavi K Neklesa; Devin J Noblin; Jeffrey L Gustafson; Anke G Roth; Kanak Raina; Craig M Crews
Journal:  Chembiochem       Date:  2012-01-23       Impact factor: 3.164

4.  Repurposing an endogenous degradation system for rapid and targeted depletion of C. elegans proteins.

Authors:  Stephen T Armenti; Lauren L Lohmer; David R Sherwood; Jeremy Nance
Journal:  Development       Date:  2014-11-05       Impact factor: 6.868

Review 5.  PROTACs: great opportunities for academia and industry.

Authors:  Xiuyun Sun; Hongying Gao; Yiqing Yang; Ming He; Yue Wu; Yugang Song; Yan Tong; Yu Rao
Journal:  Signal Transduct Target Ther       Date:  2019-12-24

Review 6.  Protein-Catalyzed Capture Agents.

Authors:  Heather D Agnew; Matthew B Coppock; Matthew N Idso; Bert T Lai; JingXin Liang; Amy M McCarthy-Torrens; Carmen M Warren; James R Heath
Journal:  Chem Rev       Date:  2019-03-06       Impact factor: 60.622

7.  Nucleating the assembly of macromolecular complexes.

Authors:  Kimberly J Peterson-Kaufman; Clayton D Carlson; José A Rodríguez-Martínez; Aseem Z Ansari
Journal:  Chembiochem       Date:  2010-09-24       Impact factor: 3.164

8.  Hijacking the E3 Ubiquitin Ligase Cereblon to Efficiently Target BRD4.

Authors:  Jing Lu; Yimin Qian; Martha Altieri; Hanqing Dong; Jing Wang; Kanak Raina; John Hines; James D Winkler; Andrew P Crew; Kevin Coleman; Craig M Crews
Journal:  Chem Biol       Date:  2015-06-04

Review 9.  Precision Control of CRISPR-Cas9 Using Small Molecules and Light.

Authors:  Soumyashree A Gangopadhyay; Kurt J Cox; Debasish Manna; Donghyun Lim; Basudeb Maji; Qingxuan Zhou; Amit Choudhary
Journal:  Biochemistry       Date:  2019-01-22       Impact factor: 3.162

Review 10.  Mahogunin Ring Finger-1 (MGRN1), a Multifaceted Ubiquitin Ligase: Recent Unraveling of Neurobiological Mechanisms.

Authors:  Arun Upadhyay; Ayeman Amanullah; Deepak Chhangani; Ribhav Mishra; Amit Prasad; Amit Mishra
Journal:  Mol Neurobiol       Date:  2015-08-09       Impact factor: 5.590

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