Literature DB >> 11158577

Changes in protein conformational mobility upon activation of extracellular regulated protein kinase-2 as detected by hydrogen exchange.

A N Hoofnagle1, K A Resing, E J Goldsmith, N G Ahn.   

Abstract

Changes in protein mobility accompany changes in conformation during the trans-activation of enzymes; however, few studies exist that validate or characterize this behavior. In this study, amide hydrogen/deuterium exchange/mass spectrometry was used to probe the conformational flexibility of extracellular signal-regulated protein kinase-2 before and after activation by phosphorylation. The exchange data indicated that extracellular regulated protein kinase-2 activation caused altered backbone flexibility in addition to the conformational changes previously established by x-ray crystallography. The changes in flexibility occurred in regions involved in substrate binding and turnover, suggesting their importance in enzyme regulation.

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Year:  2001        PMID: 11158577      PMCID: PMC14691          DOI: 10.1073/pnas.98.3.956

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

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Authors:  R Li; C Woodward
Journal:  Protein Sci       Date:  1999-08       Impact factor: 6.725

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Journal:  J Mol Biol       Date:  1996-10-11       Impact factor: 5.469

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Journal:  Science       Date:  1988-10-28       Impact factor: 47.728

Review 4.  Active and inactive protein kinases: structural basis for regulation.

Authors:  L N Johnson; M E Noble; D J Owen
Journal:  Cell       Date:  1996-04-19       Impact factor: 41.582

5.  A statistical mechanical model for hydrogen exchange in globular proteins.

Authors:  D W Miller; K A Dill
Journal:  Protein Sci       Date:  1995-09       Impact factor: 6.725

6.  Modeling deuterium exchange behavior of ERK2 using pepsin mapping to probe secondary structure.

Authors:  K A Resing; A N Hoofnagle; N G Ahn
Journal:  J Am Soc Mass Spectrom       Date:  1999-08       Impact factor: 3.109

Review 7.  Hydrogen exchange and protein folding.

Authors:  J Clarke; L S Itzhaki
Journal:  Curr Opin Struct Biol       Date:  1998-02       Impact factor: 6.809

8.  A single amino acid substitution makes ERK2 susceptible to pyridinyl imidazole inhibitors of p38 MAP kinase.

Authors:  T Fox; J T Coll; X Xie; P J Ford; U A Germann; M D Porter; S Pazhanisamy; M A Fleming; V Galullo; M S Su; K P Wilson
Journal:  Protein Sci       Date:  1998-11       Impact factor: 6.725

9.  Thermodynamic parameters from hydrogen exchange measurements.

Authors:  Y Bai; J J Englander; L Mayne; J S Milne; S W Englander
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

10.  JNK2 contains a specificity-determining region responsible for efficient c-Jun binding and phosphorylation.

Authors:  T Kallunki; B Su; I Tsigelny; H K Sluss; B Dérijard; G Moore; R Davis; M Karin
Journal:  Genes Dev       Date:  1994-12-15       Impact factor: 11.361

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  47 in total

1.  Phosphorylation-dependent changes in structure and dynamics in ERK2 detected by SDSL and EPR.

Authors:  Andrew N Hoofnagle; James W Stoner; Thomas Lee; Sandra S Eaton; Natalie G Ahn
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

2.  Rapid refinement of crystallographic protein construct definition employing enhanced hydrogen/deuterium exchange MS.

Authors:  Dennis Pantazatos; Jack S Kim; Heath E Klock; Raymond C Stevens; Ian A Wilson; Scott A Lesley; Virgil L Woods
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-08       Impact factor: 11.205

3.  Requirements for PKC-augmented JNK activation by MKK4/7.

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Journal:  Int J Biochem Cell Biol       Date:  2007-12-03       Impact factor: 5.085

4.  Distal recognition sites in substrates are required for efficient phosphorylation by the cAMP-dependent protein kinase.

Authors:  Stephen J Deminoff; Vidhya Ramachandran; Paul K Herman
Journal:  Genetics       Date:  2009-04-13       Impact factor: 4.562

5.  Analysis of conformational changes during activation of protein kinase Pak2 by amide hydrogen/deuterium exchange.

Authors:  Yuan-Hao Hsu; David A Johnson; Jolinda A Traugh
Journal:  J Biol Chem       Date:  2008-11-04       Impact factor: 5.157

Review 6.  Hydrogen-deuterium exchange mass spectrometry reveals folding and allostery in protein-protein interactions.

Authors:  Cesar A Ramirez-Sarmiento; Elizabeth A Komives
Journal:  Methods       Date:  2018-04-06       Impact factor: 3.608

7.  Carboxyl-group footprinting maps the dimerization interface and phosphorylation-induced conformational changes of a membrane-associated tyrosine kinase.

Authors:  Hao Zhang; Wei Shen; Don Rempel; John Monsey; Ilan Vidavsky; Michael L Gross; Ron Bose
Journal:  Mol Cell Proteomics       Date:  2011-03-21       Impact factor: 5.911

8.  Sites involved in intra- and interdomain allostery associated with the activation of factor VIIa pinpointed by hydrogen-deuterium exchange and electron transfer dissociation mass spectrometry.

Authors:  Hongjian Song; Ole H Olsen; Egon Persson; Kasper D Rand
Journal:  J Biol Chem       Date:  2014-10-24       Impact factor: 5.157

9.  Hydrogen exchange and ligand binding: ligand-dependent and ligand-independent protection in the Src SH3 domain.

Authors:  David Wildes; Susan Marqusee
Journal:  Protein Sci       Date:  2004-12-02       Impact factor: 6.725

10.  Dissecting interdomain communication within cAPK regulatory subunit type IIbeta using enhanced amide hydrogen/deuterium exchange mass spectrometry (DXMS).

Authors:  Kerri M Zawadzki; Yoshitomo Hamuro; Jack S Kim; Siv Garrod; David D Stranz; Susan S Taylor; Virgil L Woods
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

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