Literature DB >> 20091304

Improvement of secondary metabolite production in Streptomyces by manipulating pathway regulation.

Yihua Chen1, Michael J Smanski, Ben Shen.   

Abstract

Titer improvement is a constant requirement in the fermentation industry. The traditional method of "random mutation and screening" has been very effective despite the considerable amount of time and resources it demands. Rational metabolic engineering, with the use of recombinant DNA technology, provides a novel, alternative strategy for titer improvement that complements the empirical method used in industry. Manipulation of the specific regulatory systems that govern secondary metabolite production is an important aspect of metabolic engineering that can efficiently improve fermentation titers. In this review, we use examples from Streptomyces secondary metabolism, the most prolific source of clinically used drugs, to demonstrate the power and utility of exploiting natural regulatory networks, in particular pathway-specific regulators, for titer improvement. Efforts to improve the titers of fredericamycin, C-1027, platensimycin, and platencin in our lab are highlighted.

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Year:  2010        PMID: 20091304      PMCID: PMC3472513          DOI: 10.1007/s00253-009-2428-3

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  47 in total

Review 1.  Metabolic engineering.

Authors:  M Koffas; C Roberge; K Lee; G Stephanopoulos
Journal:  Annu Rev Biomed Eng       Date:  1999       Impact factor: 9.590

Review 2.  Regulation of secondary metabolism in streptomycetes.

Authors:  Mervyn J Bibb
Journal:  Curr Opin Microbiol       Date:  2005-04       Impact factor: 7.934

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Authors:  Arnold L Demain
Journal:  J Ind Microbiol Biotechnol       Date:  2006-01-10       Impact factor: 3.346

4.  The neocarzinostatin biosynthetic gene cluster from Streptomyces carzinostaticus ATCC 15944 involving two iterative type I polyketide synthases.

Authors:  Wen Liu; Koichi Nonaka; Liping Nie; Jian Zhang; Steven D Christenson; Juyun Bae; Steven G Van Lanen; Emmanuel Zazopoulos; Chris M Farnet; Catherine F Yang; Ben Shen
Journal:  Chem Biol       Date:  2005-03

5.  Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism.

Authors:  Irina Borodina; Preben Krabben; Jens Nielsen
Journal:  Genome Res       Date:  2005-06       Impact factor: 9.043

6.  Platensimycin is a selective FabF inhibitor with potent antibiotic properties.

Authors:  Jun Wang; Stephen M Soisson; Katherine Young; Wesley Shoop; Srinivas Kodali; Andrew Galgoci; Ronald Painter; Gopalakrishnan Parthasarathy; Yui S Tang; Richard Cummings; Sookhee Ha; Karen Dorso; Mary Motyl; Hiranthi Jayasuriya; John Ondeyka; Kithsiri Herath; Chaowei Zhang; Lorraine Hernandez; John Allocco; Angela Basilio; José R Tormo; Olga Genilloud; Francisca Vicente; Fernando Pelaez; Lawrence Colwell; Sang Ho Lee; Bruce Michael; Thomas Felcetto; Charles Gill; Lynn L Silver; Jeffery D Hermes; Ken Bartizal; John Barrett; Dennis Schmatz; Joseph W Becker; Doris Cully; Sheo B Singh
Journal:  Nature       Date:  2006-05-18       Impact factor: 49.962

7.  Discovery of platencin, a dual FabF and FabH inhibitor with in vivo antibiotic properties.

Authors:  Jun Wang; Srinivas Kodali; Sang Ho Lee; Andrew Galgoci; Ronald Painter; Karen Dorso; Fred Racine; Mary Motyl; Lorraine Hernandez; Elizabeth Tinney; Steven L Colletti; Kithsiri Herath; Richard Cummings; Oscar Salazar; Ignacio González; Angela Basilio; Francisca Vicente; Olga Genilloud; Fernando Pelaez; Hiranthi Jayasuriya; Katherine Young; Doris F Cully; Sheo B Singh
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-24       Impact factor: 11.205

Review 8.  Streptomyces genetics: a genomic perspective.

Authors:  Ashish Paradkar; Axel Trefzer; Rekha Chakraburtty; Diane Stassi
Journal:  Crit Rev Biotechnol       Date:  2003       Impact factor: 8.429

9.  Feast or famine: the global regulator DasR links nutrient stress to antibiotic production by Streptomyces.

Authors:  Sébastien Rigali; Fritz Titgemeyer; Sharief Barends; Suzanne Mulder; Andreas W Thomae; David A Hopwood; Gilles P van Wezel
Journal:  EMBO Rep       Date:  2008-05-30       Impact factor: 8.807

10.  Engineered Streptomyces platensis strains that overproduce antibiotics platensimycin and platencin.

Authors:  Michael J Smanski; Ryan M Peterson; Scott R Rajski; Ben Shen
Journal:  Antimicrob Agents Chemother       Date:  2009-01-21       Impact factor: 5.191

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  30 in total

Review 1.  Engineering of a genome-reduced host: practical application of synthetic biology in the overproduction of desired secondary metabolites.

Authors:  Hong Gao; Ying Zhuo; Elizabeth Ashforth; Lixin Zhang
Journal:  Protein Cell       Date:  2010-07-29       Impact factor: 14.870

Review 2.  Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and other actinomycetes.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2015-09-12       Impact factor: 3.346

Review 3.  Strain improvement in actinomycetes in the postgenomic era.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2011-01-21       Impact factor: 3.346

Review 4.  Metabolic engineering for the production of natural products.

Authors:  Lauren B Pickens; Yi Tang; Yit-Heng Chooi
Journal:  Annu Rev Chem Biomol Eng       Date:  2011       Impact factor: 11.059

Review 5.  Toward a Cancer Drug of Fungal Origin.

Authors:  Alexander Kornienko; Antonio Evidente; Maurizio Vurro; Véronique Mathieu; Alessio Cimmino; Marco Evidente; Willem A L van Otterlo; Ramesh Dasari; Florence Lefranc; Robert Kiss
Journal:  Med Res Rev       Date:  2015-04-08       Impact factor: 12.944

6.  Direct Involvement of the Master Nitrogen Metabolism Regulator GlnR in Antibiotic Biosynthesis in Streptomyces.

Authors:  Juan-Mei He; Hong Zhu; Guo-Song Zheng; Pan-Pan Liu; Jin Wang; Guo-Ping Zhao; Guo-Qiang Zhu; Wei-Hong Jiang; Yin-Hua Lu
Journal:  J Biol Chem       Date:  2016-11-08       Impact factor: 5.157

7.  Characterization of LnmO as a pathway-specific Crp/Fnr-type positive regulator for leinamycin biosynthesis in Streptomyces atroolivaceus and its application for titer improvement.

Authors:  Yong Huang; Dong Yang; Guohui Pan; Gong-Li Tang; Ben Shen
Journal:  Appl Microbiol Biotechnol       Date:  2016-10-05       Impact factor: 4.813

8.  Manipulation of pathway regulation in Streptomyces globisporus for overproduction of the enediyne antitumor antibiotic C-1027.

Authors:  Yihua Chen; Min Yin; Geoff P Horsman; Shengxiong Huang; Ben Shen
Journal:  J Antibiot (Tokyo)       Date:  2010-06-16       Impact factor: 2.649

9.  Expression of the platencin biosynthetic gene cluster in heterologous hosts yielding new platencin congeners.

Authors:  Michael J Smanski; Jeffrey Casper; Ryan M Peterson; Zhiguo Yu; Scott R Rajski; Ben Shen
Journal:  J Nat Prod       Date:  2012-11-16       Impact factor: 4.050

10.  An engineered strong promoter for streptomycetes.

Authors:  Weishan Wang; Xiao Li; Juan Wang; Sihai Xiang; Xiaozhou Feng; Keqian Yang
Journal:  Appl Environ Microbiol       Date:  2013-05-17       Impact factor: 4.792

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