Literature DB >> 20090182

A tetrahedron-based inhomogeneous Monte Carlo optical simulator.

H Shen1, G Wang.   

Abstract

Optical imaging has been widely applied in preclinical and clinical applications. Fifteen years ago, an efficient Monte Carlo program 'MCML' was developed for use with multi-layered turbid media and has gained popularity in the field of biophotonics. Currently, there is an increasingly pressing need for simulating tools more powerful than MCML in order to study light propagation phenomena in complex inhomogeneous objects, such as the mouse. Here we report a tetrahedron-based inhomogeneous Monte Carlo optical simulator (TIM-OS) to address this issue. By modeling an object as a tetrahedron-based inhomogeneous finite-element mesh, TIM-OS can determine the photon-triangle interaction recursively and rapidly. In numerical simulation, we have demonstrated the correctness and efficiency of TIM-OS.

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Year:  2010        PMID: 20090182      PMCID: PMC2858330          DOI: 10.1088/0031-9155/55/4/003

Source DB:  PubMed          Journal:  Phys Med Biol        ISSN: 0031-9155            Impact factor:   3.609


  27 in total

Review 1.  Shedding light onto live molecular targets.

Authors:  Ralph Weissleder; Vasilis Ntziachristos
Journal:  Nat Med       Date:  2003-01       Impact factor: 53.440

2.  A mouse optical simulation environment (MOSE) to investigate bioluminescent phenomena in the living mouse with the Monte Carlo method.

Authors:  Hui Li; Jie Tian; Fuping Zhu; Wenxiang Cong; Lihong V Wang; Eric A Hoffman; Ge Wang
Journal:  Acad Radiol       Date:  2004-09       Impact factor: 3.173

Review 3.  Looking and listening to light: the evolution of whole-body photonic imaging.

Authors:  Vasilis Ntziachristos; Jorge Ripoll; Lihong V Wang; Ralph Weissleder
Journal:  Nat Biotechnol       Date:  2005-03       Impact factor: 54.908

Review 4.  Molecular imaging in the clinical arena.

Authors:  Farouc A Jaffer; Ralph Weissleder
Journal:  JAMA       Date:  2005-02-16       Impact factor: 56.272

5.  Digimouse: a 3D whole body mouse atlas from CT and cryosection data.

Authors:  Belma Dogdas; David Stout; Arion F Chatziioannou; Richard M Leahy
Journal:  Phys Med Biol       Date:  2007-01-10       Impact factor: 3.609

6.  In vivo imaging of Drosophila melanogaster pupae with mesoscopic fluorescence tomography.

Authors:  Claudio Vinegoni; Chrysoula Pitsouli; Daniel Razansky; Norbert Perrimon; Vasilis Ntziachristos
Journal:  Nat Methods       Date:  2007-12-09       Impact factor: 28.547

7.  Modeling photon propagation in biological tissues using a generalized Delta-Eddington phase function.

Authors:  W Cong; H Shen; A Cong; Y Wang; G Wang
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-11-14

8.  Shape based Monte Carlo code for light transport in complex heterogeneous Tissues.

Authors:  Eduardo Margallo-Balbás; Patrick J French
Journal:  Opt Express       Date:  2007-10-17       Impact factor: 3.894

9.  Integral equations of the photon fluence rate and flux based on a generalized Delta-Eddington phase function.

Authors:  Wenxiang Cong; Haiou Shen; Alexander X Cong; Ge Wang
Journal:  J Biomed Opt       Date:  2008 Mar-Apr       Impact factor: 3.170

10.  Optical bioluminescence and positron emission tomography imaging of a novel fusion reporter gene in tumor xenografts of living mice.

Authors:  Pritha Ray; Anna M Wu; Sanjiv S Gambhir
Journal:  Cancer Res       Date:  2003-03-15       Impact factor: 12.701

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  36 in total

1.  OptogenSIM: a 3D Monte Carlo simulation platform for light delivery design in optogenetics.

Authors:  Yuming Liu; Steven L Jacques; Mehdi Azimipour; Jeremy D Rogers; Ramin Pashaie; Kevin W Eliceiri
Journal:  Biomed Opt Express       Date:  2015-11-16       Impact factor: 3.732

2.  Generalized mesh-based Monte Carlo for wide-field illumination and detection via mesh retessellation.

Authors:  Ruoyang Yao; Xavier Intes; Qianqian Fang
Journal:  Biomed Opt Express       Date:  2015-12-18       Impact factor: 3.732

3.  Fast perturbation Monte Carlo method for photon migration in heterogeneous turbid media.

Authors:  Angelo Sassaroli
Journal:  Opt Lett       Date:  2011-06-01       Impact factor: 3.776

4.  Comparative analysis of discrete and continuous absorption weighting estimators used in Monte Carlo simulations of radiative transport in turbid media.

Authors:  Carole K Hayakawa; Jerome Spanier; Vasan Venugopalan
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2014-02-01       Impact factor: 2.129

5.  Lensed fiber-optic probe design for efficient photon collection in scattering media.

Authors:  Youngjae Ryu; Younghoon Shin; Dasol Lee; Judith Y Altarejos; Euiheon Chung; Hyuk-Sang Kwon
Journal:  Biomed Opt Express       Date:  2014-12-17       Impact factor: 3.732

6.  Hybrid mesh and voxel based Monte Carlo algorithm for accurate and efficient photon transport modeling in complex bio-tissues.

Authors:  Shijie Yan; Qianqian Fang
Journal:  Biomed Opt Express       Date:  2020-10-08       Impact factor: 3.732

7.  Dynamic optical absorption characteristics of blood after slow and fast heating.

Authors:  Hao Jia; Bin Chen; Dong Li
Journal:  Lasers Med Sci       Date:  2017-01-13       Impact factor: 3.161

8.  Direct approach to compute Jacobians for diffuse optical tomography using perturbation Monte Carlo-based photon "replay".

Authors:  Ruoyang Yao; Xavier Intes; Qianqian Fang
Journal:  Biomed Opt Express       Date:  2018-09-04       Impact factor: 3.732

9.  A parallel adaptive finite element simplified spherical harmonics approximation solver for frequency domain fluorescence molecular imaging.

Authors:  Yujie Lu; Banghe Zhu; Haiou Shen; John C Rasmussen; Ge Wang; Eva M Sevick-Muraca
Journal:  Phys Med Biol       Date:  2010-07-30       Impact factor: 3.609

10.  Varying collimation for dark-field extraction.

Authors:  Ge Wang; Wenxiang Cong; Haiou Shen; Yu Zou
Journal:  Int J Biomed Imaging       Date:  2010-02-16
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