Literature DB >> 26819826

Generalized mesh-based Monte Carlo for wide-field illumination and detection via mesh retessellation.

Ruoyang Yao1, Xavier Intes1, Qianqian Fang2.   

Abstract

Monte Carlo methods are commonly used as the gold standard in modeling photon transport through turbid media. With the rapid development of structured light applications, an accurate and efficient method capable of simulating arbitrary illumination patterns and complex detection schemes over large surface area is in great need. Here we report a generalized mesh-based Monte Carlo algorithm to support a variety of wide-field illumination methods, including spatial-frequency-domain imaging (SFDI) patterns and arbitrary 2-D patterns. The extended algorithm can also model wide-field detectors such as a free-space CCD camera. The significantly enhanced flexibility of source and detector modeling is achieved via a fast mesh retessellation process that combines the target domain and the source/detector space in a single tetrahedral mesh. Both simulations of complex domains and comparisons with phantom measurements are included to demonstrate the flexibility, efficiency and accuracy of the extended algorithm. Our updated open-source software is provided at http://mcx.space/mmc.

Keywords:  (070.6120) Spatial light modulators; (170.3660) Light propagation in tissues; (170.5280) Photon migration; (170.6920) Time-resolved imaging; (170.7050) Turbid media

Year:  2015        PMID: 26819826      PMCID: PMC4722901          DOI: 10.1364/BOE.7.000171

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  58 in total

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3.  Investigating line- versus point-laser excitation for three-dimensional fluorescence imaging and tomography employing a trimodal imaging system.

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4.  Shape based Monte Carlo code for light transport in complex heterogeneous Tissues.

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Journal:  Opt Express       Date:  2007-10-17       Impact factor: 3.894

5.  Diffuse Optics for Tissue Monitoring and Tomography.

Authors:  T Durduran; R Choe; W B Baker; A G Yodh
Journal:  Rep Prog Phys       Date:  2010-07

6.  Coupled forward-adjoint Monte Carlo simulation of spatial-angular light fields to determine optical sensitivity in turbid media.

Authors:  Adam R Gardner; Carole K Hayakawa; Vasan Venugopalan
Journal:  J Biomed Opt       Date:  2014-06       Impact factor: 3.170

7.  In vivo tomographic imaging of deep-seated cancer using fluorescence lifetime contrast.

Authors:  William L Rice; Daria M Shcherbakova; Vladislav V Verkhusha; Anand T N Kumar
Journal:  Cancer Res       Date:  2015-02-10       Impact factor: 12.701

8.  Mesoscopic Fluorescence Molecular Tomography for Evaluating Engineered Tissues.

Authors:  Mehmet S Ozturk; Chao-Wei Chen; Robin Ji; Lingling Zhao; Bao-Ngoc B Nguyen; John P Fisher; Yu Chen; Xavier Intes
Journal:  Ann Biomed Eng       Date:  2015-12-08       Impact factor: 3.934

9.  Development of an optical imaging platform for functional imaging of small animals using wide-field excitation.

Authors:  Vivek Venugopal; Jin Chen; Xavier Intes
Journal:  Biomed Opt Express       Date:  2010-07-15       Impact factor: 3.732

10.  Fast 3D optical reconstruction in turbid media using spatially modulated light.

Authors:  Cosimo D'Andrea; Nicolas Ducros; Andrea Bassi; Simon Arridge; Gianluca Valentini
Journal:  Biomed Opt Express       Date:  2010-08-03       Impact factor: 3.732

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  20 in total

1.  Hyperspectral wide-field time domain single-pixel diffuse optical tomography platform.

Authors:  Qi Pian; Ruoyang Yao; Xavier Intes
Journal:  Biomed Opt Express       Date:  2018-11-15       Impact factor: 3.732

2.  Probing deep tissues with laser-induced thermotherapy using near-infrared light.

Authors:  Alexandre Lopes; Ricardo Gomes; Marta Castiñeras; João M P Coelho; José Paulo Santos; Pedro Vieira
Journal:  Lasers Med Sci       Date:  2019-05-17       Impact factor: 3.161

3.  Light transport modeling in highly complex tissues using the implicit mesh-based Monte Carlo algorithm.

Authors:  Yaoshen Yuan; Shijie Yan; Qianqian Fang
Journal:  Biomed Opt Express       Date:  2020-12-08       Impact factor: 3.732

4.  Dental optical tomography with upconversion nanoparticles-a feasibility study.

Authors:  Feixiao Long; Xavier Intes
Journal:  J Biomed Opt       Date:  2017-06-01       Impact factor: 3.170

5.  Direct approach to compute Jacobians for diffuse optical tomography using perturbation Monte Carlo-based photon "replay".

Authors:  Ruoyang Yao; Xavier Intes; Qianqian Fang
Journal:  Biomed Opt Express       Date:  2018-09-04       Impact factor: 3.732

6.  Radiative transfer equation modeling by streamline diffusion modified continuous Galerkin method.

Authors:  Feixiao Long; Fengyan Li; Xavier Intes; Shiva P Kotha
Journal:  J Biomed Opt       Date:  2016-03       Impact factor: 3.170

7.  System configuration optimization for mesoscopic fluorescence molecular tomography.

Authors:  Fugang Yang; Denzel Faulkner; Ruoyang Yao; Mehmet S Ozturk; Qinglan Qu; Xavier Intes
Journal:  Biomed Opt Express       Date:  2019-10-11       Impact factor: 3.732

8.  Comparison of illumination geometry for lifetime-based measurements in whole-body preclinical imaging.

Authors:  Nattawut Sinsuebphon; Alena Rudkouskaya; Margarida Barroso; Xavier Intes
Journal:  J Biophotonics       Date:  2018-06-28       Impact factor: 3.207

9.  Radiative transfer with delta-Eddington-type phase functions.

Authors:  Weimin Han; Feixiao Long; Wenxiang Cong; Xavier Intes; Ge Wang
Journal:  Appl Math Comput       Date:  2016-12-26       Impact factor: 4.091

Review 10.  Deep Learning in Biomedical Optics.

Authors:  Lei Tian; Brady Hunt; Muyinatu A Lediju Bell; Ji Yi; Jason T Smith; Marien Ochoa; Xavier Intes; Nicholas J Durr
Journal:  Lasers Surg Med       Date:  2021-05-20
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