Literature DB >> 20671350

A parallel adaptive finite element simplified spherical harmonics approximation solver for frequency domain fluorescence molecular imaging.

Yujie Lu1, Banghe Zhu, Haiou Shen, John C Rasmussen, Ge Wang, Eva M Sevick-Muraca.   

Abstract

Fluorescence molecular imaging/tomography may play an important future role in preclinical research and clinical diagnostics. Time- and frequency-domain fluorescence imaging can acquire more measurement information than the continuous wave (CW) counterpart, improving the image quality of fluorescence molecular tomography. Although diffusion approximation (DA) theory has been extensively applied in optical molecular imaging, high-order photon migration models need to be further investigated to match quantitation provided by nuclear imaging. In this paper, a frequency-domain parallel adaptive finite element solver is developed with simplified spherical harmonics (SP(N)) approximations. To fully evaluate the performance of the SP(N) approximations, a fast time-resolved tetrahedron-based Monte Carlo fluorescence simulator suitable for complex heterogeneous geometries is developed using a convolution strategy to realize the simulation of the fluorescence excitation and emission. The validation results show that high-order SP(N) can effectively correct the modeling errors of the diffusion equation, especially when the tissues have high absorption characteristics or when high modulation frequency measurements are used. Furthermore, the parallel adaptive mesh evolution strategy improves the modeling precision and the simulation speed significantly on a realistic digital mouse phantom. This solver is a promising platform for fluorescence molecular tomography using high-order approximations to the radiative transfer equation.

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Year:  2010        PMID: 20671350      PMCID: PMC2980297          DOI: 10.1088/0031-9155/55/16/002

Source DB:  PubMed          Journal:  Phys Med Biol        ISSN: 0031-9155            Impact factor:   3.609


  44 in total

1.  Fluorescence-enhanced optical imaging in large tissue volumes using a gain-modulated ICCD camera.

Authors:  Anuradha Godavarty; Margaret J Eppstein; Chaoyang Zhang; Sangeeta Theru; Alan B Thompson; Michael Gurfinkel; Eva M Sevick-Muraca
Journal:  Phys Med Biol       Date:  2003-06-21       Impact factor: 3.609

2.  Diagnostic imaging of breast cancer using fluorescence-enhanced optical tomography: phantom studies.

Authors:  A Godavarty; A B Thompson; R Roy; M Gurfinkel; M J Eppstein; C Zhang; E M Sevick-Muraca
Journal:  J Biomed Opt       Date:  2004 May-Jun       Impact factor: 3.170

3.  Uniqueness theorems in bioluminescence tomography.

Authors:  Ge Wang; Yi Li; Ming Jiang
Journal:  Med Phys       Date:  2004-08       Impact factor: 4.071

4.  Flux vector formulation for photon propagation in the biological tissue.

Authors:  W Cong; A Cong; H Shen; Y Liu; G Wang
Journal:  Opt Lett       Date:  2007-10-01       Impact factor: 3.776

5.  Spectrally resolved bioluminescence optical tomography.

Authors:  Hamid Dehghani; Scott C Davis; Shudong Jiang; Brian W Pogue; Keith D Paulsen; Michael S Patterson
Journal:  Opt Lett       Date:  2006-02-01       Impact factor: 3.776

6.  A higher order diffusion model for three-dimensional photon migration and image reconstruction in optical tomography.

Authors:  Zhen Yuan; Xin-Hua Hu; Huabei Jiang
Journal:  Phys Med Biol       Date:  2008-12-05       Impact factor: 3.609

7.  Boundary conditions for the diffusion equation in radiative transfer.

Authors:  R C Haskell; L O Svaasand; T T Tsay; T C Feng; M S McAdams; B J Tromberg
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  1994-10       Impact factor: 2.129

8.  Experimental bioluminescence tomography with fully parallel radiative-transfer-based reconstruction framework.

Authors:  Yujie Lu; Hidevaldo B Machado; Ali Douraghy; David Stout; Harvey Herschman; Arion F Chatziioannou
Journal:  Opt Express       Date:  2009-09-14       Impact factor: 3.894

9.  Time-dependent whole-body fluorescence tomography of probe bio-distributions in mice.

Authors:  Sachin Patwardhan; Sharon Bloch; Samuel Achilefu; Joseph Culver
Journal:  Opt Express       Date:  2005-04-04       Impact factor: 3.894

10.  Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome.

Authors:  Xiaokun Shu; Antoine Royant; Michael Z Lin; Todd A Aguilera; Varda Lev-Ram; Paul A Steinbach; Roger Y Tsien
Journal:  Science       Date:  2009-05-08       Impact factor: 47.728

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  9 in total

1.  Far-red fluorescence gene reporter tomography for determination of placement and viability of cell-based gene therapies.

Authors:  Yujie Lu; Chinmay D Darne; I-Chih Tan; Banghe Zhu; Mary A Hall; Zawaunyka W Lazard; Alan R Davis; Lashan Simpson; Eva M Sevick-Muraca; Elizabeth A Olmsted-Davis
Journal:  Opt Express       Date:  2013-10-07       Impact factor: 3.894

2.  Incorporating reflection boundary conditions in the Neumann series radiative transport equation: application to photon propagation and reconstruction in diffuse optical imaging.

Authors:  Abhinav K Jha; Yansong Zhu; Simon Arridge; Dean F Wong; Arman Rahmim
Journal:  Biomed Opt Express       Date:  2018-03-01       Impact factor: 3.732

3.  In vivo imaging of orthotopic prostate cancer with far-red gene reporter fluorescence tomography and in vivo and ex vivo validation.

Authors:  Yujie Lu; Chinmay D Darne; I-Chih Tan; Grace Wu; Nathaniel Wilganowski; Holly Robinson; Ali Azhdarinia; Banghe Zhu; John C Rasmussen; Eva M Sevick-Muraca
Journal:  J Biomed Opt       Date:  2013-10       Impact factor: 3.170

4.  Frequency-domain optical tomographic image reconstruction algorithm with the simplified spherical harmonics (SP3) light propagation model.

Authors:  Hyun Keol Kim; Ludguier D Montejo; Jingfei Jia; Andreas H Hielscher
Journal:  Int J Therm Sci       Date:  2017-03-18       Impact factor: 3.744

5.  A compact frequency-domain photon migration system for integration into commercial hybrid small animal imaging scanners for fluorescence tomography.

Authors:  Chinmay D Darne; Yujie Lu; I-Chih Tan; Banghe Zhu; John C Rasmussen; Anne M Smith; Shikui Yan; Eva M Sevick-Muraca
Journal:  Phys Med Biol       Date:  2012-11-22       Impact factor: 3.609

6.  A study on tetrahedron-based inhomogeneous Monte Carlo optical simulation.

Authors:  Haiou Shen; Ge Wang
Journal:  Biomed Opt Express       Date:  2010-12-03       Impact factor: 3.732

7.  Perturbative forward solver software for small localized fluorophores in tissue.

Authors:  F Martelli; S Del Bianco; P Di Ninni
Journal:  Biomed Opt Express       Date:  2011-12-02       Impact factor: 3.732

Review 8.  Near-Infrared Fluorescence-Enhanced Optical Tomography.

Authors:  Banghe Zhu; Anuradha Godavarty
Journal:  Biomed Res Int       Date:  2016-10-10       Impact factor: 3.411

9.  Extended finite element method with simplified spherical harmonics approximation for the forward model of optical molecular imaging.

Authors:  Wei Li; Huangjian Yi; Qitan Zhang; Duofang Chen; Jimin Liang
Journal:  Comput Math Methods Med       Date:  2012-11-24       Impact factor: 2.238

  9 in total

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