Literature DB >> 20080734

Template-dependent 3'-5' nucleotide addition is a shared feature of tRNAHis guanylyltransferase enzymes from multiple domains of life.

Maria G Abad1, Bhalchandra S Rao, Jane E Jackman.   

Abstract

The presence of an additional 5' guanosine residue (G(-1)) is a unique feature of tRNA(His). G(-1) is incorporated posttranscriptionally in eukarya via an unusual 3'-5' nucleotide addition reaction catalyzed by the tRNA(His) guanylyltransferase (Thg1). Yeast Thg1 catalyzes an unexpected second activity: Watson-Crick-dependent 3'-5' nucleotide addition that occurs in the opposite direction to nucleotide addition by all known DNA and RNA polymerases. This discovery led to the hypothesis that there are alternative roles for Thg1 family members that take advantage of this unusual enzymatic activity. Here we show that archaeal homologs of Thg1 catalyze G(-1) addition, in vitro and in vivo in yeast, but only in a templated reaction, i.e. with tRNA(His) substrates that contain a C(73) discriminator nucleotide. Because tRNA(His) from archaea contains C(73), these findings are consistent with a physiological function for templated nucleotide addition in archaeal tRNA(His) maturation. Moreover, unlike yeast Thg1, archaeal Thg1 enzymes also exhibit a preference for template-dependent U(-1) addition to A(73)-containing tRNA(His). Taken together, these results demonstrate that Watson-Crick template-dependent 3'-5' nucleotide addition is a shared catalytic activity exhibited by Thg1 family members from multiple domains of life, and therefore, that this unusual reaction may constitute an ancestral activity present in the earliest members of the Thg1 enzyme family.

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Year:  2009        PMID: 20080734      PMCID: PMC2818966          DOI: 10.1073/pnas.0910961107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

Review 1.  This is the end: processing, editing and repair at the tRNA 3'-terminus.

Authors:  H Schürer; S Schiffer; A Marchfelder; M Mörl
Journal:  Biol Chem       Date:  2001-08       Impact factor: 3.915

2.  Getting started with yeast.

Authors:  Fred Sherman
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

3.  Crystal structures of the Bacillus stearothermophilus CCA-adding enzyme and its complexes with ATP or CTP.

Authors:  Fang Li; Yong Xiong; Jimin Wang; HyunDae D Cho; Kozo Tomita; Alan M Weiner; Thomas A Steitz
Journal:  Cell       Date:  2002-12-13       Impact factor: 41.582

4.  Loss of a universal tRNA feature.

Authors:  Chunxia Wang; Bruno W Sobral; Kelly P Williams
Journal:  J Bacteriol       Date:  2006-12-15       Impact factor: 3.490

5.  Repair of tRNAs in metazoan mitochondria.

Authors:  A S Reichert; M Mörl
Journal:  Nucleic Acids Res       Date:  2000-05-15       Impact factor: 16.971

6.  In vivo contextual requirements for UAG translation as pyrrolysine.

Authors:  David Gordon Longstaff; Sherry Kathleen Blight; Liwen Zhang; Kari B Green-Church; Joseph Adrian Krzycki
Journal:  Mol Microbiol       Date:  2006-11-27       Impact factor: 3.501

7.  Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method.

Authors:  R Daniel Gietz; Robin A Woods
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

8.  tRNAHis maturation: an essential yeast protein catalyzes addition of a guanine nucleotide to the 5' end of tRNAHis.

Authors:  Weifeng Gu; Jane E Jackman; Amanda J Lohan; Michael W Gray; Eric M Phizicky
Journal:  Genes Dev       Date:  2003-11-21       Impact factor: 11.361

9.  Recognition of G-1:C73 atomic groups by Escherichia coli histidyl-tRNA synthetase.

Authors:  Abbey E Rosen; Karin Musier-Forsyth
Journal:  J Am Chem Soc       Date:  2004-01-14       Impact factor: 15.419

10.  G-1:C73 recognition by an arginine cluster in the active site of Escherichia coli histidyl-tRNA synthetase.

Authors:  Susan A Connolly; Abbey E Rosen; Karin Musier-Forsyth; Christopher S Francklyn
Journal:  Biochemistry       Date:  2004-02-03       Impact factor: 3.162

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  36 in total

1.  Kinetic analysis of 3'-5' nucleotide addition catalyzed by eukaryotic tRNA(His) guanylyltransferase.

Authors:  Brian A Smith; Jane E Jackman
Journal:  Biochemistry       Date:  2011-12-14       Impact factor: 3.162

Review 2.  Doing it in reverse: 3'-to-5' polymerization by the Thg1 superfamily.

Authors:  Jane E Jackman; Jonatha M Gott; Michael W Gray
Journal:  RNA       Date:  2012-03-28       Impact factor: 4.942

Review 3.  tRNA biology charges to the front.

Authors:  Eric M Phizicky; Anita K Hopper
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

4.  Crystal structure of a reverse polymerase.

Authors:  John J Perona; Javin P Oza
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-15       Impact factor: 11.205

5.  Structural basis of reverse nucleotide polymerization.

Authors:  Akiyoshi Nakamura; Taiki Nemoto; Ilka U Heinemann; Keitaro Yamashita; Tomoyo Sonoda; Keisuke Komoda; Isao Tanaka; Dieter Söll; Min Yao
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

6.  Naturally occurring dual recognition of tRNAHis substrates with and without a universal identity element.

Authors:  Yi-Hsueh Lee; Ya-Ting Lo; Chia-Pei Chang; Chung-Shu Yeh; Tien-Hsien Chang; Yu-Wei Chen; Yi-Kuan Tseng; Chien-Chia Wang
Journal:  RNA Biol       Date:  2019-06-16       Impact factor: 4.652

7.  tRNA(His) guanylyltransferase (THG1), a unique 3'-5' nucleotidyl transferase, shares unexpected structural homology with canonical 5'-3' DNA polymerases.

Authors:  Samantha J Hyde; Brian E Eckenroth; Brian A Smith; William A Eberley; Nicholas H Heintz; Jane E Jackman; Sylvie Doublié
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-08       Impact factor: 11.205

8.  Repairing tRNA termini: News from the 3' end.

Authors:  Christiane Rammelt; Walter Rossmanith
Journal:  RNA Biol       Date:  2016-09-23       Impact factor: 4.652

9.  Presence of a classical RRM-fold palm domain in Thg1-type 3'- 5'nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains.

Authors:  Vivek Anantharaman; Lakshminarayan M Iyer; L Aravind
Journal:  Biol Direct       Date:  2010-06-30       Impact factor: 4.540

Review 10.  Selenocysteine, pyrrolysine, and the unique energy metabolism of methanogenic archaea.

Authors:  Michael Rother; Joseph A Krzycki
Journal:  Archaea       Date:  2010-08-17       Impact factor: 3.273

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