Literature DB >> 21059936

tRNA(His) guanylyltransferase (THG1), a unique 3'-5' nucleotidyl transferase, shares unexpected structural homology with canonical 5'-3' DNA polymerases.

Samantha J Hyde1, Brian E Eckenroth, Brian A Smith, William A Eberley, Nicholas H Heintz, Jane E Jackman, Sylvie Doublié.   

Abstract

All known DNA and RNA polymerases catalyze the formation of phosphodiester bonds in a 5' to 3' direction, suggesting this property is a fundamental feature of maintaining and dispersing genetic information. The tRNA(His) guanylyltransferase (Thg1) is a member of a unique enzyme family whose members catalyze an unprecedented reaction in biology: 3'-5' addition of nucleotides to nucleic acid substrates. The 2.3-Å crystal structure of human THG1 (hTHG1) reported here shows that, despite the lack of sequence similarity, hTHG1 shares unexpected structural homology with canonical 5'-3' DNA polymerases and adenylyl/guanylyl cyclases, two enzyme families known to use a two-metal-ion mechanism for catalysis. The ability of the same structural architecture to catalyze both 5'-3' and 3'-5' reactions raises important questions concerning selection of the 5'-3' mechanism during the evolution of nucleotide polymerases.

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Year:  2010        PMID: 21059936      PMCID: PMC2996709          DOI: 10.1073/pnas.1010436107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

Review 1.  Aminoacyl-tRNA synthesis.

Authors:  M Ibba; D Soll
Journal:  Annu Rev Biochem       Date:  2000       Impact factor: 23.643

Review 2.  Aminoacyl-tRNA synthetases: versatile players in the changing theater of translation.

Authors:  Christopher Francklyn; John J Perona; Joern Puetz; Ya-Ming Hou
Journal:  RNA       Date:  2002-11       Impact factor: 4.942

3.  Crystal structures of an archaeal class I CCA-adding enzyme and its nucleotide complexes.

Authors:  Yong Xiong; Fang Li; Jimin Wang; Alan M Weiner; Thomas A Steitz
Journal:  Mol Cell       Date:  2003-11       Impact factor: 17.970

4.  Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.

Authors:  Luis G Brieba; Brandt F Eichman; Robert J Kokoska; Sylvie Doublié; Tom A Kunkel; Tom Ellenberger
Journal:  EMBO J       Date:  2004-08-05       Impact factor: 11.598

5.  An attempt to unify the structure of polymerases.

Authors:  M Delarue; O Poch; N Tordo; D Moras; P Argos
Journal:  Protein Eng       Date:  1990-05

6.  Role of the extra G-C pair at the end of the acceptor stem of tRNA(His) in aminoacylation.

Authors:  H Himeno; T Hasegawa; T Ueda; K Watanabe; K Miura; M Shimizu
Journal:  Nucleic Acids Res       Date:  1989-10-11       Impact factor: 16.971

7.  Post-transcriptional nucleotide addition is responsible for the formation of the 5' terminus of histidine tRNA.

Authors:  L Cooley; B Appel; D Söll
Journal:  Proc Natl Acad Sci U S A       Date:  1982-11       Impact factor: 11.205

8.  tRNAHis maturation: an essential yeast protein catalyzes addition of a guanine nucleotide to the 5' end of tRNAHis.

Authors:  Weifeng Gu; Jane E Jackman; Amanda J Lohan; Michael W Gray; Eric M Phizicky
Journal:  Genes Dev       Date:  2003-11-21       Impact factor: 11.361

9.  Recognition of G-1:C73 atomic groups by Escherichia coli histidyl-tRNA synthetase.

Authors:  Abbey E Rosen; Karin Musier-Forsyth
Journal:  J Am Chem Soc       Date:  2004-01-14       Impact factor: 15.419

10.  Structural basis for the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism.

Authors:  L S Beese; T A Steitz
Journal:  EMBO J       Date:  1991-01       Impact factor: 11.598

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  33 in total

1.  Kinetic analysis of 3'-5' nucleotide addition catalyzed by eukaryotic tRNA(His) guanylyltransferase.

Authors:  Brian A Smith; Jane E Jackman
Journal:  Biochemistry       Date:  2011-12-14       Impact factor: 3.162

Review 2.  Doing it in reverse: 3'-to-5' polymerization by the Thg1 superfamily.

Authors:  Jane E Jackman; Jonatha M Gott; Michael W Gray
Journal:  RNA       Date:  2012-03-28       Impact factor: 4.942

3.  Crystal structure of a reverse polymerase.

Authors:  John J Perona; Javin P Oza
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-15       Impact factor: 11.205

4.  Structural basis of reverse nucleotide polymerization.

Authors:  Akiyoshi Nakamura; Taiki Nemoto; Ilka U Heinemann; Keitaro Yamashita; Tomoyo Sonoda; Keisuke Komoda; Isao Tanaka; Dieter Söll; Min Yao
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

5.  Minimal requirements for reverse polymerization and tRNA repair by tRNAHis guanylyltransferase.

Authors:  Riddhi Desai; Kunmo Kim; Hanna C Büchsenschütz; Allan W Chen; Yumin Bi; Mitchell R Mann; Matthew A Turk; Christina Z Chung; Ilka U Heinemann
Journal:  RNA Biol       Date:  2017-09-29       Impact factor: 4.652

6.  In vitro substrate specificities of 3'-5' polymerases correlate with biological outcomes of tRNA 5'-editing reactions.

Authors:  Yicheng Long; Jane E Jackman
Journal:  FEBS Lett       Date:  2015-07-02       Impact factor: 4.124

7.  A mutation in the THG1L gene in a family with cerebellar ataxia and developmental delay.

Authors:  Simon Edvardson; Yael Elbaz-Alon; Chaim Jalas; Ashanti Matlock; Krishna Patel; Katherine Labbé; Avraham Shaag; Jane E Jackman; Orly Elpeleg
Journal:  Neurogenetics       Date:  2016-06-15       Impact factor: 2.660

8.  Mutations in ZMYND10, a gene essential for proper axonemal assembly of inner and outer dynein arms in humans and flies, cause primary ciliary dyskinesia.

Authors:  Daniel J Moore; Alexandros Onoufriadis; Amelia Shoemark; Michael A Simpson; Petra I zur Lage; Sandra C de Castro; Lucia Bartoloni; Giuseppe Gallone; Stavroula Petridi; Wesley J Woollard; Dinu Antony; Miriam Schmidts; Teresa Didonna; Periklis Makrythanasis; Jeremy Bevillard; Nigel P Mongan; Jana Djakow; Gerard Pals; Jane S Lucas; June K Marthin; Kim G Nielsen; Federico Santoni; Michel Guipponi; Claire Hogg; Stylianos E Antonarakis; Richard D Emes; Eddie M K Chung; Nicholas D E Greene; Jean-Louis Blouin; Andrew P Jarman; Hannah M Mitchison
Journal:  Am J Hum Genet       Date:  2013-07-25       Impact factor: 11.025

9.  Mitochondrial tRNA 5'-editing in Dictyostelium discoideum and Polysphondylium pallidum.

Authors:  Maria G Abad; Yicheng Long; R Dimitri Kinchen; Elinor T Schindel; Michael W Gray; Jane E Jackman
Journal:  J Biol Chem       Date:  2014-04-15       Impact factor: 5.157

10.  Structures of the noncanonical RNA ligase RtcB reveal the mechanism of histidine guanylylation.

Authors:  Kevin K Desai; Craig A Bingman; George N Phillips; Ronald T Raines
Journal:  Biochemistry       Date:  2013-04-05       Impact factor: 3.162

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