Literature DB >> 11592395

This is the end: processing, editing and repair at the tRNA 3'-terminus.

H Schürer1, S Schiffer, A Marchfelder, M Mörl.   

Abstract

The generation of a mature tRNA 3'-end is an important step in the processing pathways leading to functional tRNA molecules. While 5'-end processing by RNase P is similar in all organisms, generation of the mature 3'-terminus seems to be more variable and complex. The first step in this reaction is the removal of 3'-trailer sequences. In bacteria, this is a multistep process performed by endo- and exonucleases. In contrast, the majority of eukaryotes generate the mature tRNA 3'-end in a single step reaction, which consists of an endonucleolytic cut at the tRNA terminus. After removal of the 3'-trailer, a terminal CCA triplet has to be added to allow charging of the tRNA with its cognate amino acid. The enzyme catalyzing this reaction is tRNA nucleotidyltransferase, homologs of which have been found in representatives of all three kingdoms. Furthermore, in metazoan mitochondria, some genes encode 3'-terminally truncated tRNAs, which are restored in an editing reaction in order to yield functional tRNAs. Interestingly, this reaction is not restricted to distinct tRNAs, but seems to act on a variety of tRNA molecules and represents therefore a more general tRNA repair mechanism than a specialized editing reaction. In this review, the current knowledge about these crucial reactions is summarized.

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Year:  2001        PMID: 11592395     DOI: 10.1515/BC.2001.144

Source DB:  PubMed          Journal:  Biol Chem        ISSN: 1431-6730            Impact factor:   3.915


  36 in total

1.  tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features.

Authors:  Christian Marck; Henri Grosjean
Journal:  RNA       Date:  2002-10       Impact factor: 4.942

2.  Mitochondrial tRNA(Leu(UUR)) mutation m.3302A > G presenting as childhood-onset severe myopathy: threshold determination through segregation study.

Authors:  Diana Ballhausen; Frédéric Guerry; Dagmar Hahn; André Schaller; Jean-Marc Nuoffer; Luisa Bonafé; Pierre-Yves Jeannet; Sebastien Jacquemont
Journal:  J Inherit Metab Dis       Date:  2010-05-11       Impact factor: 4.982

3.  Intracellular mRNA cleavage by 3' tRNase under the direction of 2'-O-methyl RNA heptamers.

Authors:  Masato Tamura; Chikako Nashimoto; Noriko Miyake; Yasushi Daikuhara; Kozo Ochi; Masayuki Nashimoto
Journal:  Nucleic Acids Res       Date:  2003-08-01       Impact factor: 16.971

Review 4.  Doing it in reverse: 3'-to-5' polymerization by the Thg1 superfamily.

Authors:  Jane E Jackman; Jonatha M Gott; Michael W Gray
Journal:  RNA       Date:  2012-03-28       Impact factor: 4.942

5.  The structure of the flexible arm of Thermotoga maritima tRNase Z differs from those of homologous enzymes.

Authors:  Ryohei Ishii; Asako Minagawa; Hiroaki Takaku; Masamichi Takagi; Masayuki Nashimoto; Shigeyuki Yokoyama
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-07-21

6.  tRNAHis guanylyltransferase catalyzes a 3'-5' polymerization reaction that is distinct from G-1 addition.

Authors:  Jane E Jackman; Eric M Phizicky
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-26       Impact factor: 11.205

7.  Initiation factor-independent translation mediated by the hepatitis C virus internal ribosome entry site.

Authors:  Alissa M Lancaster; Eric Jan; Peter Sarnow
Journal:  RNA       Date:  2006-03-23       Impact factor: 4.942

8.  [3'-32P]-labeling tRNA with nucleotidyltransferase for assaying aminoacylation and peptide bond formation.

Authors:  Sarah Ledoux; Olke C Uhlenbeck
Journal:  Methods       Date:  2008-02       Impact factor: 3.608

9.  Co-evolution of tRNA 3' trailer sequences with 3' processing enzymes in bacteria.

Authors:  Zhongwei Li; Xin Gong; Vedang H Joshi; Muxin Li
Journal:  RNA       Date:  2005-04-05       Impact factor: 4.942

10.  Template-dependent 3'-5' nucleotide addition is a shared feature of tRNAHis guanylyltransferase enzymes from multiple domains of life.

Authors:  Maria G Abad; Bhalchandra S Rao; Jane E Jackman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-18       Impact factor: 11.205

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