Literature DB >> 20025863

Enhancers: the abundance and function of regulatory sequences beyond promoters.

Michael Bulger1, Mark Groudine.   

Abstract

Transcriptional control in mammals and Drosophila is often mediated by regulatory sequences located far from gene promoters. Different classes of such elements - particularly enhancers, but also locus control regions and insulators - have been defined by specific functional assays, although it is not always clear how these assays relate to the function of these elements within their native loci. Recent advances in genomics suggest, however, that such elements are highly abundant within the genome and may represent the primary mechanism by which cell- and developmental-specific gene expression is accomplished. In this review, we discuss the functional parameters of enhancers as defined by specific assays, along with the frequency with which they occur in the genome. In addition, we examine the available evidence for the mechanism by which such elements communicate or interact with the promoters they regulate. Copyright 2010 Elsevier Inc. All rights reserved.

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Year:  2009        PMID: 20025863      PMCID: PMC3060611          DOI: 10.1016/j.ydbio.2009.11.035

Source DB:  PubMed          Journal:  Dev Biol        ISSN: 0012-1606            Impact factor:   3.582


  59 in total

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2.  The active spatial organization of the beta-globin locus requires the transcription factor EKLF.

Authors:  Roy Drissen; Robert-Jan Palstra; Nynke Gillemans; Erik Splinter; Frank Grosveld; Sjaak Philipsen; Wouter de Laat
Journal:  Genes Dev       Date:  2004-10-15       Impact factor: 11.361

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Authors:  D A Gdula; T I Gerasimova; V G Corces
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-03       Impact factor: 11.205

4.  The beta -globin locus control region (LCR) functions primarily by enhancing the transition from transcription initiation to elongation.

Authors:  Tomoyuki Sawado; Jessica Halow; M A Bender; Mark Groudine
Journal:  Genes Dev       Date:  2003-04-02       Impact factor: 11.361

5.  Dependence of enhancer-mediated transcription of the immunoglobulin mu gene on nuclear matrix attachment regions.

Authors:  W C Forrester; C van Genderen; T Jenuwein; R Grosschedl
Journal:  Science       Date:  1994-08-26       Impact factor: 47.728

6.  The SV40 72 base repair repeat has a striking effect on gene expression both in SV40 and other chimeric recombinants.

Authors:  P Moreau; R Hen; B Wasylyk; R Everett; M P Gaub; P Chambon
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7.  Expression of a beta-globin gene is enhanced by remote SV40 DNA sequences.

Authors:  J Banerji; S Rusconi; W Schaffner
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8.  The beta-globin nuclear compartment in development and erythroid differentiation.

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9.  Active RNA polymerases are localized within discrete transcription "factories' in human nuclei.

Authors:  F J Iborra; A Pombo; D A Jackson; P R Cook
Journal:  J Cell Sci       Date:  1996-06       Impact factor: 5.285

10.  Synthetic human beta-globin 5'HS2 constructs function as locus control regions only in multicopy transgene concatamers.

Authors:  J Ellis; D Talbot; N Dillon; F Grosveld
Journal:  EMBO J       Date:  1993-01       Impact factor: 11.598

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  97 in total

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6.  Study of the effects of enhancer and insulator on the chromatin structure in Drosophila melanogaster.

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Journal:  Curr Biol       Date:  2011-07-07       Impact factor: 10.834

8.  Identification of biologically relevant enhancers in human erythroid cells.

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9.  Genome-wide significant locus of beta-trace protein, a novel kidney function biomarker, identified in European and African Americans.

Authors:  Adrienne Tin; Brad C Astor; Eric Boerwinkle; Ron C Hoogeveen; Josef Coresh; W H Linda Kao
Journal:  Nephrol Dial Transplant       Date:  2013-01-16       Impact factor: 5.992

10.  A survey of 6,300 genomic fragments for cis-regulatory activity in the imaginal discs of Drosophila melanogaster.

Authors:  Aurélie Jory; Carlos Estella; Matt W Giorgianni; Matthew Slattery; Todd R Laverty; Gerald M Rubin; Richard S Mann
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