Literature DB >> 20023012

Completed genome sequence of the anaerobic iron-oxidizing bacterium Acidovorax ebreus strain TPSY.

Kathryne G Byrne-Bailey1, Karrie A Weber, Antinea H Chair, Saumyaditya Bose, Traci Knox, Trisha L Spanbauer, Olga Chertkov, John D Coates.   

Abstract

Acidovorax ebreus strain TPSY is the first anaerobic nitrate-dependent Fe(II) oxidizer for which there is a completed genome sequence. Preliminary protein annotation revealed an organism optimized for survival in a complex environmental system. Here, we briefly report the completed and annotated genome sequence of strain TPSY.

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Year:  2009        PMID： 20023012      PMCID： PMC2820844          DOI： 10.1128/JB.01449-09

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  21 in total

1.  Anaerobic nitrate-dependent iron(II) bio-oxidation by a novel lithoautotrophic betaproteobacterium, strain 2002.

Authors:  Karrie A Weber; Jarrod Pollock; Kimberly A Cole; Susan M O'Connor; Laurie A Achenbach; John D Coates
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

2.  Anaerobic, nitrate-dependent microbial oxidation of ferrous iron.

Authors:  K L Straub; M Benz; B Schink; F Widdel
Journal:  Appl Environ Microbiol       Date:  1996-04       Impact factor: 4.792

Review 3.  CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea.

Authors:  Rotem Sorek; Victor Kunin; Philip Hugenholtz
Journal:  Nat Rev Microbiol       Date:  2008-03       Impact factor: 60.633

4.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  Nucleotide sequence of a chromosomal mercury resistance determinant from a Bacillus sp. with broad-spectrum mercury resistance.

Authors:  Y Wang; M Moore; H S Levinson; S Silver; C Walsh; I Mahler
Journal:  J Bacteriol       Date:  1989-01       Impact factor: 3.490

7.  Anaerobic biooxidation of Fe(II) by Dechlorosoma suillum.

Authors:  J G Lack; S K Chaudhuri; R Chakraborty; L A Achenbach; J D Coates
Journal:  Microb Ecol       Date:  2002-04-15       Impact factor: 4.552

8.  Genes for a microaerobically induced oxidase complex in Bradyrhizobium japonicum are essential for a nitrogen-fixing endosymbiosis.

Authors:  O Preisig; D Anthamatten; H Hennecke
Journal:  Proc Natl Acad Sci U S A       Date:  1993-04-15       Impact factor: 11.205

9.  HecA, a member of a class of adhesins produced by diverse pathogenic bacteria, contributes to the attachment, aggregation, epidermal cell killing, and virulence phenotypes of Erwinia chrysanthemi EC16 on Nicotiana clevelandii seedlings.

Authors:  Clemencia M Rojas; Jong Hyun Ham; Wen-Ling Deng; Jeff J Doyle; Alan Collmer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

10.  Physiological and taxonomic description of the novel autotrophic, metal oxidizing bacterium, Pseudogulbenkiania sp. strain 2002.

Authors:  Karrie A Weber; David B Hedrick; Aaron D Peacock; J Cameron Thrash; David C White; Laurie A Achenbach; John D Coates
Journal:  Appl Microbiol Biotechnol       Date:  2009-03-31       Impact factor: 4.813
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  23 in total

1.  Draft genome sequence of the anaerobic, nitrate-dependent, Fe(II)-oxidizing bacterium Pseudogulbenkiania ferrooxidans strain 2002.

Authors:  Kathryne G Byrne-Bailey; Karrie A Weber; John D Coates
Journal:  J Bacteriol       Date:  2012-05       Impact factor: 3.490

2.  Microbial community changes in response to ethanol or methanol amendments for U(VI) reduction.

Authors:  Tatiana A Vishnivetskaya; Craig C Brandt; Andrew S Madden; Meghan M Drake; Joel E Kostka; Denise M Akob; Kirsten Küsel; Anthony V Palumbo
Journal:  Appl Environ Microbiol       Date:  2010-07-02       Impact factor: 4.792

3.  Enhanced growth of Acidovorax sp. strain 2AN during nitrate-dependent Fe(II) oxidation in batch and continuous-flow systems.

Authors:  Anirban Chakraborty; Eric E Roden; Jürgen Schieber; Flynn Picardal
Journal:  Appl Environ Microbiol       Date:  2011-10-14       Impact factor: 4.792

4.  Microbiomes of unreactive and pathologically altered ileocecal lymph nodes of slaughter pigs.

Authors:  Evelyne Mann; Monika Dzieciol; Barbara U Metzler-Zebeli; Martin Wagner; Stephan Schmitz-Esser
Journal:  Appl Environ Microbiol       Date:  2013-10-18       Impact factor: 4.792

5.  Potential for Polychlorinated Biphenyl Biodegradation in Sediments from Indiana Harbor and Ship Canal.

Authors:  Yi Liang; Andres Martinez; Keri C Hornbuckle; Timothy E Mattes
Journal:  Int Biodeterior Biodegradation       Date:  2014-04-01       Impact factor: 4.320

6.  Environmental and taxonomic bacterial diversity of anaerobic uranium(IV) bio-oxidation.

Authors:  Karrie A Weber; J Cameron Thrash; J Ian Van Trump; Laurie A Achenbach; John D Coates
Journal:  Appl Environ Microbiol       Date:  2011-05-13       Impact factor: 4.792

7.  Investigating the Microbial Degradation Potential in Oil Sands Fluid Fine Tailings Using Gamma Irradiation: A Metagenomic Perspective.

Authors:  Danielle VanMensel; Subba Rao Chaganti; Ryan Boudens; Thomas Reid; Jan Ciborowski; Christopher Weisener
Journal:  Microb Ecol       Date:  2017-03-01       Impact factor: 4.552

8.  Genome sequence of the facultative anaerobic arsenite-oxidizing and nitrate-reducing bacterium Acidovorax sp. strain NO1.

Authors:  Yinyan Huang; Hang Li; Christopher Rensing; Kai Zhao; Laurel Johnstone; Gejiao Wang
Journal:  J Bacteriol       Date:  2012-03       Impact factor: 3.490

9.  Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer.

Authors:  Kelly C Wrighton; Cindy J Castelle; Michael J Wilkins; Laura A Hug; Itai Sharon; Brian C Thomas; Kim M Handley; Sean W Mullin; Carrie D Nicora; Andrea Singh; Mary S Lipton; Philip E Long; Kenneth H Williams; Jillian F Banfield
Journal:  ISME J       Date:  2014-03-13       Impact factor: 10.302

10.  Fe(II) oxidation is an innate capability of nitrate-reducing bacteria that involves abiotic and biotic reactions.

Authors:  Hans K Carlson; Iain C Clark; Steven J Blazewicz; Anthony T Iavarone; John D Coates
Journal:  J Bacteriol       Date:  2013-05-17       Impact factor: 3.490
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