Literature DB >> 22374962

Genome sequence of the facultative anaerobic arsenite-oxidizing and nitrate-reducing bacterium Acidovorax sp. strain NO1.

Yinyan Huang1, Hang Li, Christopher Rensing, Kai Zhao, Laurel Johnstone, Gejiao Wang.   

Abstract

Acidovorax sp. strain NO1, isolated from gold mine soil, was shown to be a facultative anaerobic arsenite-oxidizing and nitrate-reducing bacterium. The reported draft genome predicts the presence of genes involved in arsenic metabolism, nitrate reduction, phosphate transport, and multiple metal resistances and indicates putative horizontal gene transfer events.

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Year:  2012        PMID： 22374962      PMCID： PMC3294833          DOI： 10.1128/JB.06814-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  14 in total

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Journal:  Mol Genet Genomics       Date:  2002-10-29       Impact factor: 3.291

2.  Genome sequence of the highly efficient arsenite-oxidizing bacterium Achromobacter arsenitoxydans SY8.

Authors:  Xiangyang Li; Yao Hu; Jing Gong; Yanbing Lin; Laurel Johnstone; Christopher Rensing; Gejiao Wang
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3.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

4.  Active site residues controlling substrate specificity in 2-nitrotoluene dioxygenase from Acidovorax sp. strain JS42.

Authors:  Kyung-Seon Lee; Juanito V Parales; Rosmarie Friemann; Rebecca E Parales
Journal:  J Ind Microbiol Biotechnol       Date:  2005-10-15       Impact factor: 3.346

5.  Acidovorax, a new genus for Pseudomonas facilis, Pseudomonas delafieldii, E. Falsen (EF) group 13, EF group 16, and several clinical isolates, with the species Acidovorax facilis comb. nov., Acidovorax delafieldii comb. nov., and Acidovorax temperans sp. nov.

Authors:  A Willems; E Falsen; B Pot; E Jantzen; B Hoste; P Vandamme; M Gillis; K Kersters; J De Ley
Journal:  Int J Syst Bacteriol       Date:  1990-10

6.  Novel gene clusters involved in arsenite oxidation and resistance in two arsenite oxidizers: Achromobacter sp. SY8 and Pseudomonas sp. TS44.

Authors:  Lin Cai; Christopher Rensing; Xiangyang Li; Gejiao Wang
Journal:  Appl Microbiol Biotechnol       Date:  2009-03-13       Impact factor: 4.813

7.  Anaerobic oxidation of arsenite in Mono Lake water and by a facultative, arsenite-oxidizing chemoautotroph, strain MLHE-1.

Authors:  Ronald S Oremland; Shelley E Hoeft; Joanne M Santini; Nasreen Bano; Ryan A Hollibaugh; James T Hollibaugh
Journal:  Appl Environ Microbiol       Date:  2002-10       Impact factor: 4.792

8.  Transfer of several phytopathogenic Pseudomonas species to Acidovorax as Acidovorax avenae subsp. avenae subsp. nov., comb. nov., Acidovorax avenae subsp. citrulli, Acidovorax avenae subsp. cattleyae, and Acidovorax konjaci.

Authors:  A Willems; M Goor; S Thielemans; M Gillis; K Kersters; J De Ley
Journal:  Int J Syst Bacteriol       Date:  1992-01

9.  Type IV Pili are required for virulence, twitching motility, and biofilm formation of acidovorax avenae subsp. Citrulli.

Authors:  Ofir Bahar; Tal Goffer; Saul Burdman
Journal:  Mol Plant Microbe Interact       Date:  2009-08       Impact factor: 4.171

10.  A tale of two oxidation states: bacterial colonization of arsenic-rich environments.

Authors:  Daniel Muller; Claudine Médigue; Sandrine Koechler; Valérie Barbe; Mohamed Barakat; Emmanuel Talla; Violaine Bonnefoy; Evelyne Krin; Florence Arsène-Ploetze; Christine Carapito; Michael Chandler; Benoît Cournoyer; Stéphane Cruveiller; Caroline Dossat; Simon Duval; Michael Heymann; Emmanuelle Leize; Aurélie Lieutaud; Didier Lièvremont; Yuko Makita; Sophie Mangenot; Wolfgang Nitschke; Philippe Ortet; Nicolas Perdrial; Barbara Schoepp; Patricia Siguier; Diliana D Simeonova; Zoé Rouy; Béatrice Segurens; Evelyne Turlin; David Vallenet; Alain Van Dorsselaer; Stéphanie Weiss; Jean Weissenbach; Marie-Claire Lett; Antoine Danchin; Philippe N Bertin
Journal:  PLoS Genet       Date:  2007-03-05       Impact factor: 5.917
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  15 in total

1.  Phyllosphere bacterial community of floating macrophytes in paddy soil environments as revealed by illumina high-throughput sequencing.

Authors:  Wan-Ying Xie; Jian-Qiang Su; Yong-Guan Zhu
Journal:  Appl Environ Microbiol       Date:  2014-10-31       Impact factor: 4.792

2.  Studies on arsenic transforming groundwater bacteria and their role in arsenic release from subsurface sediment.

Authors:  Angana Sarkar; Sufia K Kazy; Pinaki Sar
Journal:  Environ Sci Pollut Res Int       Date:  2014-04-26       Impact factor: 4.223

3.  The prokaryotic community of a historically mining-impacted tropical stream sediment is as diverse as that from a pristine stream sediment.

Authors:  Mariana P Reis; Francisco A R Barbosa; Edmar Chartone-Souza; Andréa M A Nascimento
Journal:  Extremophiles       Date:  2013-02-07       Impact factor: 2.395

4.  Microbiological oxidation of antimony(III) with oxygen or nitrate by bacteria isolated from contaminated mine sediments.

Authors:  Lee R Terry; Thomas R Kulp; Heather Wiatrowski; Laurence G Miller; Ronald S Oremland
Journal:  Appl Environ Microbiol       Date:  2015-10-02       Impact factor: 4.792

5.  Organization and regulation of the arsenite oxidase operon of the moderately acidophilic and facultative chemoautotrophic Thiomonas arsenitoxydans.

Authors:  Djamila Slyemi; Danielle Moinier; Emmanuel Talla; Violaine Bonnefoy
Journal:  Extremophiles       Date:  2013-08-24       Impact factor: 2.395

6.  In silico analysis of bacterial arsenic islands reveals remarkable synteny and functional relatedness between arsenate and phosphate.

Authors:  Hang Li; Mingshun Li; Yinyan Huang; Christopher Rensing; Gejiao Wang
Journal:  Front Microbiol       Date:  2013-11-20       Impact factor: 5.640

7.  Genomic evidence reveals the extreme diversity and wide distribution of the arsenic-related genes in Burkholderiales.

Authors:  Xiangyang Li; Linshuang Zhang; Gejiao Wang
Journal:  PLoS One       Date:  2014-03-14       Impact factor: 3.240

8.  The microbial community of a passive biochemical reactor treating arsenic, zinc, and sulfate-rich seepage.

Authors:  Susan Anne Baldwin; Maryam Khoshnoodi; Maryam Rezadehbashi; Marcus Taupp; Steven Hallam; Al Mattes; Hamed Sanei
Journal:  Front Bioeng Biotechnol       Date:  2015-03-06

9.  The diversity and abundance of As(III) oxidizers on root iron plaque is critical for arsenic bioavailability to rice.

Authors:  Min Hu; Fangbai Li; Chuanping Liu; Weijian Wu
Journal:  Sci Rep       Date:  2015-09-01       Impact factor: 4.379

10.  First Draft Genome Sequence of the Acidovorax caeni sp. nov. Type Strain R-24608 (DSM 19327).

Authors:  Elham Ehsani; Ruy Jauregui; Robert Geffers; Michael Jarek; Nico Boon; Dietmar H Pieper; Ramiro Vilchez-Vargas
Journal:  Genome Announc       Date:  2015-11-19
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