Literature DB >> 22493205

Draft genome sequence of the anaerobic, nitrate-dependent, Fe(II)-oxidizing bacterium Pseudogulbenkiania ferrooxidans strain 2002.

Kathryne G Byrne-Bailey1, Karrie A Weber, John D Coates.   

Abstract

Pseudogulbenkiania ferrooxidans strain 2002 was isolated as a lithoautotrophic, Fe(II)-oxidizing, nitrate-reducing bacterium. Phylogenetically, it is in a clade within the family Neisseriaceae in the order Nessieriales of the class Betaproteobacteria. It is anticipated that comparative genomic analysis of this strain with other nitrate-dependent, Fe(II)-oxidizing bacteria will aid in the elucidation of the genetics and biochemistry underlying this critically important geochemical metabolism.

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Year:  2012        PMID： 22493205      PMCID： PMC3347076          DOI： 10.1128/JB.00214-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

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3.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

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Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

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5.  Complete genome sequence of the denitrifying and N(2)O-reducing bacterium Pseudogulbenkiania sp. strain NH8B.

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6.  Biogenic magnetite formation through anaerobic biooxidation of Fe(II).

Authors:  S K Chaudhuri; J G Lack; J D Coates
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7.  The pio operon is essential for phototrophic Fe(II) oxidation in Rhodopseudomonas palustris TIE-1.

Authors:  Yongqin Jiao; Dianne K Newman
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8.  Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction.

Authors:  A S Beliaev; D A Saffarini
Journal:  J Bacteriol       Date:  1998-12       Impact factor: 3.490

9.  Physiological and taxonomic description of the novel autotrophic, metal oxidizing bacterium, Pseudogulbenkiania sp. strain 2002.

Authors:  Karrie A Weber; David B Hedrick; Aaron D Peacock; J Cameron Thrash; David C White; Laurie A Achenbach; John D Coates
Journal:  Appl Microbiol Biotechnol       Date:  2009-03-31       Impact factor: 4.813

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Authors:  Victor M Markowitz; Ernest Szeto; Krishna Palaniappan; Yuri Grechkin; Ken Chu; I-Min A Chen; Inna Dubchak; Iain Anderson; Athanasios Lykidis; Konstantinos Mavromatis; Natalia N Ivanova; Nikos C Kyrpides
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1.  An Approach to In Silico Dissection of Bacterial Intelligence Through Selective Genomic Tools.

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2.  Identifying and Quantifying the Intermediate Processes during Nitrate-Dependent Iron(II) Oxidation.

Authors:  James Jamieson; Henning Prommer; Anna H Kaksonen; Jing Sun; Adam J Siade; Anna Yusov; Benjamin Bostick
Journal:  Environ Sci Technol       Date:  2018-05-03       Impact factor: 9.028

3.  Fe(II) oxidation is an innate capability of nitrate-reducing bacteria that involves abiotic and biotic reactions.

Authors:  Hans K Carlson; Iain C Clark; Steven J Blazewicz; Anthony T Iavarone; John D Coates
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4.  Genome Analysis of the Biotechnologically Relevant Acidophilic Iron Oxidising Strain JA12 Indicates Phylogenetic and Metabolic Diversity within the Novel Genus "Ferrovum".

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5.  Denitrification and Nitrate-Dependent Fe(II) Oxidation in Various Pseudogulbenkiania Strains.

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6.  Unchanged nitrate and nitrite isotope fractionation during heterotrophic and Fe(II)-mixotrophic denitrification suggest a non-enzymatic link between denitrification and Fe(II) oxidation.

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  7 in total

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