Literature DB >> 17285659

Partial (13)C and (15)N chemical-shift assignments of the disulfide-bond-forming enzyme DsbB by 3D magic-angle spinning NMR spectroscopy.

Ying Li1, Deborah A Berthold, Heather L Frericks, Robert B Gennis, Chad M Rienstra.   

Abstract

DsbB is a 20 kDa Escherichia coli inner-membrane protein that catalyzes disulfide-bond formation in periplasmic proteins. We report highly resolved, multidimensional magic-angle spinning NMR spectra at 750 MHz (1)H frequency, which enable partial (13)C and (15)N chemical-shift assignments of the signals. The narrow line widths observed indicate excellent microscopic order of the protein sample, suitable for full structure determination by solid-state NMR. Experiments were performed exclusively on uniformly (13)C,(15)N-labeled DsbB. Chemical-shift-correlation experiments based on dipolar transfer yielded strong signals in the 3D spectra, many of which have been site-specifically assigned to the four transmembrane helices of DsbB. Significant numbers of additional residues have been assigned to stretches of amino acids, although not yet placed in the amino acid sequence. We also report the temperature dependence of signal intensities from -50 degrees C to 0 degrees C, a range over which samples of DsbB are highly stable. Structural and dynamic information derived from SSNMR studies can give insight into DsbB in a state that so far has not been successfully crystallized.

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Year:  2007        PMID: 17285659     DOI: 10.1002/cbic.200600484

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  31 in total

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Authors:  Michael C Brothers; Anna E Nesbitt; Michael J Hallock; Sanjeewa G Rupasinghe; Ming Tang; Jason Harris; Jerome Baudry; Mary A Schuler; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2011-11-03       Impact factor: 2.835

2.  ICMRBS founder's medal 2006: biological solid-state NMR, methods and applications.

Authors:  Marc Baldus
Journal:  J Biomol NMR       Date:  2007-07-27       Impact factor: 2.835

3.  Dual-band selective double cross polarization for heteronuclear polarization transfer between dilute spins in solid-state MAS NMR.

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Journal:  J Magn Reson       Date:  2012-03-05       Impact factor: 2.229

4.  Frequency-selective heteronuclear dephasing and selective carbonyl labeling to deconvolute crowded spectra of membrane proteins by magic angle spinning NMR.

Authors:  Nathaniel J Traaseth; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2011-03-17       Impact factor: 2.229

5.  Magic-angle spinning solid-state NMR spectroscopy of nanodisc-embedded human CYP3A4.

Authors:  Aleksandra Z Kijac; Ying Li; Stephen G Sligar; Chad M Rienstra
Journal:  Biochemistry       Date:  2007-11-07       Impact factor: 3.162

6.  NMR reveals pathway for ferric mineral precursors to the central cavity of ferritin.

Authors:  Paola Turano; Daniela Lalli; Isabella C Felli; Elizabeth C Theil; Ivano Bertini
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-16       Impact factor: 11.205

7.  High resolution NMR spectroscopy of nanocrystalline proteins at ultra-high magnetic field.

Authors:  Lindsay J Sperling; Andrew J Nieuwkoop; Andrew S Lipton; Deborah A Berthold; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2009-12-02       Impact factor: 2.835

8.  Assigning large proteins in the solid state: a MAS NMR resonance assignment strategy using selectively and extensively 13C-labelled proteins.

Authors:  Victoria A Higman; Jeremy Flinders; Matthias Hiller; Stefan Jehle; Stefan Markovic; Sebastian Fiedler; Barth-Jan van Rossum; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2009-07-17       Impact factor: 2.835

9.  Dynamic nature of disulphide bond formation catalysts revealed by crystal structures of DsbB.

Authors:  Kenji Inaba; Satoshi Murakami; Atsushi Nakagawa; Hiroka Iida; Mai Kinjo; Koreaki Ito; Mamoru Suzuki
Journal:  EMBO J       Date:  2009-02-12       Impact factor: 11.598

10.  NMR Signal Quenching from Bound Biradical Affinity Reagents in DNP Samples.

Authors:  Rivkah Rogawski; Ivan V Sergeyev; Yinglu Zhang; Timothy H Tran; Yongjun Li; Liang Tong; Ann E McDermott
Journal:  J Phys Chem B       Date:  2017-11-29       Impact factor: 2.991

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