Literature DB >> 20938709

When you can't trust the DNA: RNA editing changes transcript sequences.

Volker Knoop1.   

Abstract

RNA editing describes targeted sequence alterations in RNAs so that the transcript sequences differ from their DNA template. Since the original discovery of RNA editing in trypanosomes nearly 25 years ago more than a dozen such processes of nucleotide insertions, deletions, and exchanges have been identified in evolutionarily widely separated groups of the living world including plants, animals, fungi, protists, bacteria, and viruses. In many cases gene expression in mitochondria is affected, but RNA editing also takes place in chloroplasts and in nucleocytosolic genetic environments. While some RNA editing systems largely seem to repair defect genes (cryptogenes), others have obvious functions in modulating gene activities. The present review aims for an overview on the current states of research in the different systems of RNA editing by following a historic timeline along the respective original discoveries.

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Year:  2010        PMID: 20938709     DOI: 10.1007/s00018-010-0538-9

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  259 in total

1.  The evolution of chloroplast RNA editing.

Authors:  Michael Tillich; Pascal Lehwark; Brian R Morton; Uwe G Maier
Journal:  Mol Biol Evol       Date:  2006-07-11       Impact factor: 16.240

2.  Measuring editing activity and identifying cytidine-to-uridine mRNA editing factors in cells and biochemical isolates.

Authors:  Harold C Smith
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

3.  RNA editing: transfer of genetic information from gRNA to precursor mRNA in vitro.

Authors:  S D Seiwert; K Stuart
Journal:  Science       Date:  1994-10-07       Impact factor: 47.728

4.  Complexes from Trypanosoma brucei that exhibit deletion editing and other editing-associated properties.

Authors:  R A Corell; L K Read; G R Riley; J K Nellissery; T E Allen; M L Kable; M D Wachal; S D Seiwert; P J Myler; K D Stuart
Journal:  Mol Cell Biol       Date:  1996-04       Impact factor: 4.272

5.  RNA editing in plant mitochondria.

Authors:  P S Covello; M W Gray
Journal:  Nature       Date:  1989-10-19       Impact factor: 49.962

6.  Plant mitochondrial RNA editing.

Authors:  S Steinhauser; S Beckert; I Capesius; O Malek; V Knoop
Journal:  J Mol Evol       Date:  1999-03       Impact factor: 2.395

7.  Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing.

Authors:  Kenji Okuda; Fumiyoshi Myouga; Reiko Motohashi; Kazuo Shinozaki; Toshiharu Shikanai
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-02       Impact factor: 11.205

8.  An additional editing site is present in apolipoprotein B mRNA.

Authors:  N Navaratnam; D Patel; R R Shah; J C Greeve; L M Powell; T J Knott; J Scott
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

9.  Mitochondrial RNA editing of cytochrome c oxidase subunit II (coxII) in the primitive vascular plant Psilotum nudum.

Authors:  G L Sper-Whitis; A L Russell; J C Vaughn
Journal:  Biochim Biophys Acta       Date:  1994-06-21

10.  Altered editing in cyclic nucleotide phosphodiesterase 8A1 gene transcripts of systemic lupus erythematosus T lymphocytes.

Authors:  Robert J Orlowski; Kenneth S O'Rourke; Irene Olorenshaw; Gregory A Hawkins; Stefan Maas; Dama Laxminarayana
Journal:  Immunology       Date:  2008-05-06       Impact factor: 7.397

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  64 in total

Review 1.  Biological significance of RNA editing in cells.

Authors:  Wei Tang; Yongjun Fei; Michael Page
Journal:  Mol Biotechnol       Date:  2012-09       Impact factor: 2.695

Review 2.  Dual RNA-seq of pathogen and host.

Authors:  Alexander J Westermann; Stanislaw A Gorski; Jörg Vogel
Journal:  Nat Rev Microbiol       Date:  2012-09       Impact factor: 60.633

3.  To thy proteins be true: RNA editing in plants.

Authors:  Aleel K Grennan
Journal:  Plant Physiol       Date:  2011-06       Impact factor: 8.340

Review 4.  Parallel Evolution and Lineage-Specific Expansion of RNA Editing in Ctenophores.

Authors:  Andrea B Kohn; Rachel S Sanford; Masa-aki Yoshida; Leonid L Moroz
Journal:  Integr Comp Biol       Date:  2015-06-18       Impact factor: 3.326

5.  Punctuated plastome reduction and host-parasite horizontal gene transfer in the holoparasitic plant genus Aphyllon.

Authors:  Adam C Schneider; Harold Chun; Saša Stefanović; Bruce G Baldwin
Journal:  Proc Biol Sci       Date:  2018-09-19       Impact factor: 5.349

6.  Pentatricopeptide repeats: modular blocks for building RNA-binding proteins.

Authors:  Aleksandra Filipovska; Oliver Rackham
Journal:  RNA Biol       Date:  2013-04-23       Impact factor: 4.652

Review 7.  The application of RNA-seq to the comprehensive analysis of plant mitochondrial transcriptomes.

Authors:  James D Stone; Helena Storchova
Journal:  Mol Genet Genomics       Date:  2014-09-03       Impact factor: 3.291

Review 8.  Post-transcriptional mending of gene sequences: Looking under the hood of mitochondrial gene expression in diplonemids.

Authors:  Matus Valach; Sandrine Moreira; Drahomíra Faktorová; Julius Lukeš; Gertraud Burger
Journal:  RNA Biol       Date:  2016-10-07       Impact factor: 4.652

9.  RNA editing in bacteria: occurrence, regulation and significance.

Authors:  Dan Bar-Yaacov; Yitzhak Pilpel; Orna Dahan
Journal:  RNA Biol       Date:  2018-08-02       Impact factor: 4.652

10.  The evolutionary conservation of rps3 introns and rps19-rps3-rpl16 gene cluster in Adiantum capillus-veneris mitochondria.

Authors:  Savino Bonavita; Teresa Maria Rosaria Regina
Journal:  Curr Genet       Date:  2015-08-18       Impact factor: 3.886

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