Literature DB >> 19903530

Radiation damage effects at four specimen temperatures from 4 to 100 K.

Benjamin E Bammes1, Joanita Jakana, Michael F Schmid, Wah Chiu.   

Abstract

Radiation damage is the primary factor that limits resolution in electron cryo-microscopy (cryo-EM) of frozen-hydrated biological samples. Negative effects of radiation damage are attenuated by cooling specimens to cryogenic temperatures using liquid nitrogen or liquid helium. We have examined the relationship between specimen temperature and radiation damage across a broad spectrum of resolution by analyzing images of frozen-hydrated catalase crystal at four specimen temperatures: 4, 25, 42, and 100K. For each temperature, "exposure series" were collected consisting of consecutive images of the same area of sample, each with 10 e(-)/A(2) exposure per image. Radiation damage effects were evaluated by examining the correlation between cumulative exposure and normalized amplitudes or IQ values of Bragg peaks across a broad range of resolution (4.0-173.5A). Results indicate that for sub-nanometer resolution, liquid nitrogen specimen temperature (100K) provides the most consistent high-quality data while yielding statistically equivalent protection from radiation damage compared to the three lower temperatures. At lower resolution, suitable for tomography, intermediate temperatures (25 or 42K) may provide a modest improvement in cryo-protection without introducing deleterious effects evident at 4 K. (c) 2009 Elsevier Inc. All rights reserved.

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Year:  2009        PMID: 19903530      PMCID: PMC2826528          DOI: 10.1016/j.jsb.2009.11.001

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  26 in total

1.  Effects of radiation damage with 400-kV electrons on frozen, hydrated actin bundles.

Authors:  M F Schmid; J Jakana; P Matsudaira; W Chiu
Journal:  J Struct Biol       Date:  1992 Jan-Feb       Impact factor: 2.867

2.  Dose tolerance at helium and nitrogen temperatures for whole cell electron tomography.

Authors:  Luis R Comolli; Kenneth H Downing
Journal:  J Struct Biol       Date:  2005-09-13       Impact factor: 2.867

3.  A comparison of liquid nitrogen and liquid helium as cryogens for electron cryotomography.

Authors:  Cristina V Iancu; Elizabeth R Wright; J Bernard Heymann; Grant J Jensen
Journal:  J Struct Biol       Date:  2006-01-04       Impact factor: 2.867

4.  2dx--user-friendly image processing for 2D crystals.

Authors:  Bryant Gipson; Xiangyan Zeng; Zi Yan Zhang; Henning Stahlberg
Journal:  J Struct Biol       Date:  2006-09-01       Impact factor: 2.867

5.  Beef liver catalase structure: interpretation of electron micrographs.

Authors:  P N Unwin
Journal:  J Mol Biol       Date:  1975-10-15       Impact factor: 5.469

6.  Molecular structure determination by electron microscopy of unstained crystalline specimens.

Authors:  P N Unwin; R Henderson
Journal:  J Mol Biol       Date:  1975-05-25       Impact factor: 5.469

7.  Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction.

Authors:  Xing Zhang; Ethan Settembre; Chen Xu; Philip R Dormitzer; Richard Bellamy; Stephen C Harrison; Nikolaus Grigorieff
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-31       Impact factor: 11.205

8.  Electron imaging of crotoxin complex thin crystal at 3.5 A.

Authors:  T W Jeng; W Chiu; F Zemlin; E Zeitler
Journal:  J Mol Biol       Date:  1984-05-05       Impact factor: 5.469

9.  Radiation damage of purple membrane at low temperature.

Authors:  S B Hayward; R M Glaeser
Journal:  Ultramicroscopy       Date:  1979       Impact factor: 2.689

10.  Quantitative assessment of radiation damage in a thin protein crystal.

Authors:  T W Jeng; W Chiu
Journal:  J Microsc       Date:  1984-10       Impact factor: 1.758

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  28 in total

Review 1.  Single-particle cryo-electron microscopy of macromolecular complexes.

Authors:  Georgios Skiniotis; Daniel R Southworth
Journal:  Microscopy (Oxf)       Date:  2015-11-25       Impact factor: 1.571

2.  Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist frequency.

Authors:  Benjamin E Bammes; Ryan H Rochat; Joanita Jakana; Dong-Hua Chen; Wah Chiu
Journal:  J Struct Biol       Date:  2012-01-21       Impact factor: 2.867

Review 3.  Reaching the information limit in cryo-EM of biological macromolecules: experimental aspects.

Authors:  Robert M Glaeser; Richard J Hall
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

4.  Accurate model annotation of a near-atomic resolution cryo-EM map.

Authors:  Corey F Hryc; Dong-Hua Chen; Pavel V Afonine; Joanita Jakana; Zhao Wang; Cameron Haase-Pettingell; Wen Jiang; Paul D Adams; Jonathan A King; Michael F Schmid; Wah Chiu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-07       Impact factor: 11.205

5.  Practical performance evaluation of a 10k × 10k CCD for electron cryo-microscopy.

Authors:  Benjamin E Bammes; Ryan H Rochat; Joanita Jakana; Wah Chiu
Journal:  J Struct Biol       Date:  2011-05-17       Impact factor: 2.867

Review 6.  While the revolution will not be crystallized, biochemistry reigns supreme.

Authors:  Yoshimasa Takizawa; Elad Binshtein; Amanda L Erwin; Tasia M Pyburn; Kathleen F Mittendorf; Melanie D Ohi
Journal:  Protein Sci       Date:  2016-10-06       Impact factor: 6.725

Review 7.  Cryo-electron microscopy for the study of virus assembly.

Authors:  Daniel Luque; José R Castón
Journal:  Nat Chem Biol       Date:  2020-02-20       Impact factor: 15.040

Review 8.  Reconstructing virus structures from nanometer to near-atomic resolutions with cryo-electron microscopy and tomography.

Authors:  Juan Chang; Xiangan Liu; Ryan H Rochat; Matthew L Baker; Wah Chiu
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

9.  Cryo-EM techniques to resolve the structure of HSV-1 capsid-associated components.

Authors:  Ryan H Rochat; Corey W Hecksel; Wah Chiu
Journal:  Methods Mol Biol       Date:  2014

10.  Quantitative Analysis of Electron Beam Damage in Organic Thin Films.

Authors:  Zino J W A Leijten; Arthur D A Keizer; Gijsbertus de With; Heiner Friedrich
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2017-05-09       Impact factor: 4.126

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