Literature DB >> 24671690

Cryo-EM techniques to resolve the structure of HSV-1 capsid-associated components.

Ryan H Rochat1, Corey W Hecksel, Wah Chiu.   

Abstract

Electron cryo-microscopy has become a routine technique to determine the structure of biochemically purified herpes simplex virus capsid particles. This chapter describes the procedures of specimen preparation by cryopreservation; low dose and low temperature imaging in an electron cryo-microscope; and data processing for reconstruction. This methodology has yielded subnanometer resolution structures of the icosahedral capsid shell where α-helices and β-sheets of individual subunits can be recognized. A relaxation of the symmetry in the reconstruction steps allows us to resolve the DNA packaging protein located at one of the 12 vertices in the capsid.

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Year:  2014        PMID: 24671690      PMCID: PMC4370171          DOI: 10.1007/978-1-4939-0428-0_18

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  52 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Seeing the herpesvirus capsid at 8.5 A.

Authors:  Z H Zhou; M Dougherty; J Jakana; J He; F J Rixon; W Chiu
Journal:  Science       Date:  2000-05-05       Impact factor: 47.728

3.  Segmentation of two- and three-dimensional data from electron microscopy using eigenvector analysis.

Authors:  Achilleas S Frangakis; Reiner Hegerl
Journal:  J Struct Biol       Date:  2002 Apr-May       Impact factor: 2.867

4.  IMIRS: a high-resolution 3D reconstruction package integrated with a relational image database.

Authors:  Yuyao Liang; Eugene Y Ke; Z Hong Zhou
Journal:  J Struct Biol       Date:  2002-03       Impact factor: 2.867

5.  FREALIGN: high-resolution refinement of single particle structures.

Authors:  Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2006-06-02       Impact factor: 2.867

6.  EMAN2: an extensible image processing suite for electron microscopy.

Authors:  Guang Tang; Liwei Peng; Philip R Baldwin; Deepinder S Mann; Wen Jiang; Ian Rees; Steven J Ludtke
Journal:  J Struct Biol       Date:  2006-06-08       Impact factor: 2.867

7.  De novo backbone trace of GroEL from single particle electron cryomicroscopy.

Authors:  Steven J Ludtke; Matthew L Baker; Dong-Hua Chen; Jiu-Li Song; David T Chuang; Wah Chiu
Journal:  Structure       Date:  2008-03       Impact factor: 5.006

8.  Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling.

Authors:  Matthew L Baker; Corey F Hryc; Qinfen Zhang; Weimin Wu; Joanita Jakana; Cameron Haase-Pettingell; Pavel V Afonine; Paul D Adams; Jonathan A King; Wen Jiang; Wah Chiu
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-09       Impact factor: 11.205

9.  3.88 A structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy.

Authors:  Xuekui Yu; Lei Jin; Z Hong Zhou
Journal:  Nature       Date:  2008-04-30       Impact factor: 49.962

10.  Visualizing virus assembly intermediates inside marine cyanobacteria.

Authors:  Wei Dai; Caroline Fu; Desislava Raytcheva; John Flanagan; Htet A Khant; Xiangan Liu; Ryan H Rochat; Cameron Haase-Pettingell; Jacqueline Piret; Steve J Ludtke; Kuniaki Nagayama; Michael F Schmid; Jonathan A King; Wah Chiu
Journal:  Nature       Date:  2013-10-09       Impact factor: 49.962

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  1 in total

1.  Structure of the herpes simplex virus type 2 C-capsid with capsid-vertex-specific component.

Authors:  Jialing Wang; Shuai Yuan; Dongjie Zhu; Hao Tang; Nan Wang; Wenyuan Chen; Qiang Gao; Yuhua Li; Junzhi Wang; Hongrong Liu; Xinzheng Zhang; Zihe Rao; Xiangxi Wang
Journal:  Nat Commun       Date:  2018-09-10       Impact factor: 14.919

  1 in total

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