Literature DB >> 19903480

tRNAs: cellular barcodes for amino acids.

Rajat Banerjee1, Shawn Chen, Kiley Dare, Marla Gilreath, Mette Praetorius-Ibba, Medha Raina, Noah M Reynolds, Theresa Rogers, Hervé Roy, Srujana S Yadavalli, Michael Ibba.   

Abstract

The role of tRNA in translating the genetic code has received considerable attention over the last 50 years, and we now know in great detail how particular amino acids are specifically selected and brought to the ribosome in response to the corresponding mRNA codon. Over the same period, it has also become increasingly clear that the ribosome is not the only destination to which tRNAs deliver amino acids, with processes ranging from lipid modification to antibiotic biosynthesis all using aminoacyl-tRNAs as substrates. Here we review examples of alternative functions for tRNA beyond translation, which together suggest that the role of tRNA is to deliver amino acids for a variety of processes that includes, but is not limited to, protein synthesis.

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Year:  2010        PMID: 19903480      PMCID: PMC2795112          DOI: 10.1016/j.febslet.2009.11.013

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  118 in total

1.  The crystal structure of leucyl-tRNA synthetase complexed with tRNALeu in the post-transfer-editing conformation.

Authors:  Michael Tukalo; Anna Yaremchuk; Ryuya Fukunaga; Shigeyuki Yokoyama; Stephen Cusack
Journal:  Nat Struct Mol Biol       Date:  2005-09-11       Impact factor: 15.369

2.  Cys-tRNA(Pro) editing by Haemophilus influenzae YbaK via a novel synthetase.YbaK.tRNA ternary complex.

Authors:  Songon An; Karin Musier-Forsyth
Journal:  J Biol Chem       Date:  2005-08-08       Impact factor: 5.157

Review 3.  The co-evolution of host cationic antimicrobial peptides and microbial resistance.

Authors:  Andreas Peschel; Hans-Georg Sahl
Journal:  Nat Rev Microbiol       Date:  2006-06-12       Impact factor: 60.633

Review 4.  TOR signaling in growth and metabolism.

Authors:  Stephan Wullschleger; Robbie Loewith; Michael N Hall
Journal:  Cell       Date:  2006-02-10       Impact factor: 41.582

5.  Aminoacyl-transferases and the N-end rule pathway of prokaryotic/eukaryotic specificity in a human pathogen.

Authors:  Emmanuelle Graciet; Rong-Gui Hu; Konstantin Piatkov; Joon Haeng Rhee; Erich M Schwarz; Alexander Varshavsky
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-21       Impact factor: 11.205

6.  Stationary-phase expression and aminoacylation of a transfer-RNA-like small RNA.

Authors:  Sandro F Ataide; Brian C Jester; Kevin M Devine; Michael Ibba
Journal:  EMBO Rep       Date:  2005-08       Impact factor: 8.807

7.  DltABCD- and MprF-mediated cell envelope modifications of Staphylococcus aureus confer resistance to platelet microbicidal proteins and contribute to virulence in a rabbit endocarditis model.

Authors:  Christopher Weidenmaier; Andreas Peschel; Volkhard A J Kempf; Natalie Lucindo; Michael R Yeaman; Arnold S Bayer
Journal:  Infect Immun       Date:  2005-12       Impact factor: 3.441

8.  Structural basis of RNA-dependent recruitment of glutamine to the genetic code.

Authors:  Hiroyuki Oshikane; Kelly Sheppard; Shuya Fukai; Yuko Nakamura; Ryuichiro Ishitani; Tomoyuki Numata; R Lynn Sherrer; Liang Feng; Emmanuelle Schmitt; Michel Panvert; Sylvain Blanquet; Yves Mechulam; Dieter Söll; Osamu Nureki
Journal:  Science       Date:  2006-06-30       Impact factor: 47.728

9.  Ammonia channel couples glutaminase with transamidase reactions in GatCAB.

Authors:  Akiyoshi Nakamura; Min Yao; Sarin Chimnaronk; Naoki Sakai; Isao Tanaka
Journal:  Science       Date:  2006-06-30       Impact factor: 47.728

10.  Retrograde movement of tRNAs from the cytoplasm to the nucleus in Saccharomyces cerevisiae.

Authors:  Hussam H Shaheen; Anita K Hopper
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-22       Impact factor: 11.205

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  31 in total

Review 1.  Roles of tRNA in cell wall biosynthesis.

Authors:  Kiley Dare; Michael Ibba
Journal:  Wiley Interdiscip Rev RNA       Date:  2012-01-19       Impact factor: 9.957

2.  Kinetics of tRNA folding monitored by aminoacylation.

Authors:  Hari Bhaskaran; Annia Rodriguez-Hernandez; John J Perona
Journal:  RNA       Date:  2012-01-27       Impact factor: 4.942

3.  Membrane anchoring of aminoacyl-tRNA synthetases by convergent acquisition of a novel protein domain.

Authors:  Elvira Olmedo-Verd; Javier Santamaría-Gómez; Jesús A G Ochoa de Alda; Lluis Ribas de Pouplana; Ignacio Luque
Journal:  J Biol Chem       Date:  2011-09-30       Impact factor: 5.157

4.  Analysis of aminoacyl- and peptidyl-tRNAs by gel electrophoresis.

Authors:  Brian D Janssen; Elie J Diner; Christopher S Hayes
Journal:  Methods Mol Biol       Date:  2012

Review 5.  tRNA biology charges to the front.

Authors:  Eric M Phizicky; Anita K Hopper
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

Review 6.  Non-canonical roles of tRNAs and tRNA mimics in bacterial cell biology.

Authors:  Assaf Katz; Sara Elgamal; Andrei Rajkovic; Michael Ibba
Journal:  Mol Microbiol       Date:  2016-06-28       Impact factor: 3.501

7.  A flexible, scalable method for preparation of homogeneous aminoacylated tRNAs.

Authors:  Jinwei Zhang; Adrian R Ferré-D'Amaré
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

Review 8.  Bacterial transfer RNAs.

Authors:  Jennifer Shepherd; Michael Ibba
Journal:  FEMS Microbiol Rev       Date:  2015-03-21       Impact factor: 16.408

9.  Combining tRNA sequencing methods to characterize plant tRNA expression and post-transcriptional modification.

Authors:  Jessica M Warren; Thalia Salinas-Giegé; Guillaume Hummel; Nicole L Coots; Joshua M Svendsen; Kristen C Brown; Laurence Drouard; Daniel B Sloan
Journal:  RNA Biol       Date:  2020-07-25       Impact factor: 4.652

10.  β-Lysine discrimination by lysyl-tRNA synthetase.

Authors:  Marla S Gilreath; Hervé Roy; Tammy J Bullwinkle; Assaf Katz; William W Navarre; Michael Ibba
Journal:  FEBS Lett       Date:  2011-09-12       Impact factor: 4.124

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