Literature DB >> 19895722

Genome-wide association studies: a primer.

A Corvin1, N Craddock, P F Sullivan.   

Abstract

There have been nearly 400 genome-wide association studies (GWAS) published since 2005. The GWAS approach has been exceptionally successful in identifying common genetic variants that predispose to a variety of complex human diseases and biochemical and anthropometric traits. Although this approach is relatively new, there are many excellent reviews of different aspects of the GWAS method. Here, we provide a primer, an annotated overview of the GWAS method with particular reference to psychiatric genetics. We dissect the GWAS methodology into its components and provide a brief description with citations and links to reviews that cover the topic in detail.

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Year:  2009        PMID: 19895722      PMCID: PMC4181332          DOI: 10.1017/S0033291709991723

Source DB:  PubMed          Journal:  Psychol Med        ISSN: 0033-2917            Impact factor:   7.723


  48 in total

1.  Complement factor H polymorphism in age-related macular degeneration.

Authors:  Robert J Klein; Caroline Zeiss; Emily Y Chew; Jen-Yue Tsai; Richard S Sackler; Chad Haynes; Alice K Henning; John Paul SanGiovanni; Shrikant M Mane; Susan T Mayne; Michael B Bracken; Frederick L Ferris; Jurg Ott; Colin Barnstable; Josephine Hoh
Journal:  Science       Date:  2005-03-10       Impact factor: 47.728

Review 2.  Defining the phenotype in human genetic studies: forward genetics and reverse phenotyping.

Authors:  Thomas G Schulze; Francis J McMahon
Journal:  Hum Hered       Date:  2004       Impact factor: 0.444

3.  GWAS for psychiatric disease: is the framework built on a solid foundation?

Authors:  K J Mitchell; D J Porteous
Journal:  Mol Psychiatry       Date:  2009-08       Impact factor: 15.992

4.  Gene ontology analysis of GWA study data sets provides insights into the biology of bipolar disorder.

Authors:  Peter Holmans; Elaine K Green; Jaspreet Singh Pahwa; Manuel A R Ferreira; Shaun M Purcell; Pamela Sklar; Michael J Owen; Michael C O'Donovan; Nick Craddock
Journal:  Am J Hum Genet       Date:  2009-06-18       Impact factor: 11.025

5.  Common variants on chromosome 6p22.1 are associated with schizophrenia.

Authors:  Jianxin Shi; Douglas F Levinson; Jubao Duan; Alan R Sanders; Yonglan Zheng; Itsik Pe'er; Frank Dudbridge; Peter A Holmans; Alice S Whittemore; Bryan J Mowry; Ann Olincy; Farooq Amin; C Robert Cloninger; Jeremy M Silverman; Nancy G Buccola; William F Byerley; Donald W Black; Raymond R Crowe; Jorge R Oksenberg; Daniel B Mirel; Kenneth S Kendler; Robert Freedman; Pablo V Gejman
Journal:  Nature       Date:  2009-07-01       Impact factor: 49.962

6.  Strategies and issues in the detection of pathway enrichment in genome-wide association studies.

Authors:  Mun-Gwan Hong; Yudi Pawitan; Patrik K E Magnusson; Jonathan A Prince
Journal:  Hum Genet       Date:  2009-05-01       Impact factor: 4.132

7.  Dissecting the phenotype in genome-wide association studies of psychiatric illness.

Authors:  Nick Craddock; Kenneth Kendler; Michael Neale; John Nurnberger; Shaun Purcell; Marcella Rietschel; Roy Perlis; Susan L Santangelo; Thomas G Schulze; Thomas Schulze; Jordan W Smoller; Anita Thapar
Journal:  Br J Psychiatry       Date:  2009-08       Impact factor: 9.319

8.  SNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studies.

Authors:  Zongli Xu; Jack A Taylor
Journal:  Nucleic Acids Res       Date:  2009-05-05       Impact factor: 16.971

9.  Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.

Authors:  Jeffrey C Barrett; David G Clayton; Patrick Concannon; Beena Akolkar; Jason D Cooper; Henry A Erlich; Cécile Julier; Grant Morahan; Jørn Nerup; Concepcion Nierras; Vincent Plagnol; Flemming Pociot; Helen Schuilenburg; Deborah J Smyth; Helen Stevens; John A Todd; Neil M Walker; Stephen S Rich
Journal:  Nat Genet       Date:  2009-05-10       Impact factor: 38.330

10.  Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.

Authors:  Shaun M Purcell; Naomi R Wray; Jennifer L Stone; Peter M Visscher; Michael C O'Donovan; Patrick F Sullivan; Pamela Sklar
Journal:  Nature       Date:  2009-07-01       Impact factor: 49.962

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  28 in total

Review 1.  Genetic architectures of psychiatric disorders: the emerging picture and its implications.

Authors:  Patrick F Sullivan; Mark J Daly; Michael O'Donovan
Journal:  Nat Rev Genet       Date:  2012-07-10       Impact factor: 53.242

2.  Quality control, imputation and analysis of genome-wide genotyping data from the Illumina HumanCoreExome microarray.

Authors:  Jonathan R I Coleman; Jack Euesden; Hamel Patel; Amos A Folarin; Stephen Newhouse; Gerome Breen
Journal:  Brief Funct Genomics       Date:  2015-10-05       Impact factor: 4.241

Review 3.  Genetic determinants of depression: recent findings and future directions.

Authors:  Erin C Dunn; Ruth C Brown; Yael Dai; Jonathan Rosand; Nicole R Nugent; Ananda B Amstadter; Jordan W Smoller
Journal:  Harv Rev Psychiatry       Date:  2015 Jan-Feb       Impact factor: 3.732

4.  The genetic and environmental influences of event-related gamma oscillations on bipolar disorder.

Authors:  Mei-Hua Hall; Kevin M Spencer; Katja Schulze; Colm McDonald; Sridevi Kalidindi; Eugenia Kravariti; Fergus Kane; Robin M Murray; Elvira Bramon; Pak Sham; Frühling Rijsdijk
Journal:  Bipolar Disord       Date:  2011-05       Impact factor: 6.744

Review 5.  Candidate gene-environment interaction research: reflections and recommendations.

Authors:  Danielle M Dick; Arpana Agrawal; Matthew C Keller; Amy Adkins; Fazil Aliev; Scott Monroe; John K Hewitt; Kenneth S Kendler; Kenneth J Sher
Journal:  Perspect Psychol Sci       Date:  2015-01

Review 6.  Large-scale genomics unveils the genetic architecture of psychiatric disorders.

Authors:  Jacob Gratten; Naomi R Wray; Matthew C Keller; Peter M Visscher
Journal:  Nat Neurosci       Date:  2014-05-27       Impact factor: 24.884

7.  Genetics and Epigenetics of Eating Disorders.

Authors:  Zeynep Yilmaz; J Andrew Hardaway; Cynthia M Bulik
Journal:  Adv Genomics Genet       Date:  2015-03-10

Review 8.  Molecular genomic research designs.

Authors:  Kelley Baumgartel; Jamie Zelazny; Theresa Timcheck; Chantel Snyder; Mandy Bell; Yvette P Conley
Journal:  Annu Rev Nurs Res       Date:  2011

9.  Genome-wide association studies in psychiatry: what have we learned?

Authors:  Ann L Collins; Patrick F Sullivan
Journal:  Br J Psychiatry       Date:  2013-01       Impact factor: 9.319

10.  Genetics and Epigenetics of Eating Disorders.

Authors:  Stephanie Zerwas; Cynthia M Bulik
Journal:  Psychiatr Ann       Date:  2011-11
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