Literature DB >> 25620996

Candidate gene-environment interaction research: reflections and recommendations.

Danielle M Dick1, Arpana Agrawal2, Matthew C Keller3, Amy Adkins4, Fazil Aliev4, Scott Monroe5, John K Hewitt2, Kenneth S Kendler4, Kenneth J Sher6.   

Abstract

Studying how genetic predispositions come together with environmental factors to contribute to complex behavioral outcomes has great potential for advancing the understanding of the development of psychopathology. It represents a clear theoretical advance over studying these factors in isolation. However, research at the intersection of multiple fields creates many challenges. We review several reasons why the rapidly expanding candidate gene-environment interaction (cG×E) literature should be considered with a degree of caution. We discuss lessons learned about candidate gene main effects from the evolving genetics literature and how these inform the study of cG×E. We review the importance of the measurement of the gene and environment of interest in cG×E studies. We discuss statistical concerns with modeling cG×E that are frequently overlooked. Furthermore, we review other challenges that have likely contributed to the cG×E literature being difficult to interpret, including low power and publication bias. Many of these issues are similar to other concerns about research integrity (e.g., high false-positive rates) that have received increasing attention in the social sciences. We provide recommendations for rigorous research practices for cG×E studies that we believe will advance its potential to contribute more robustly to the understanding of complex behavioral phenotypes.
© The Author(s) 2014.

Entities:  

Keywords:  G×E; candidate genes; genetics; gene–environment interaction

Mesh:

Year:  2015        PMID: 25620996      PMCID: PMC4302784          DOI: 10.1177/1745691614556682

Source DB:  PubMed          Journal:  Perspect Psychol Sci        ISSN: 1745-6916


  141 in total

1.  Mineralocorticoid receptor Iso/Val (rs5522) genotype moderates the association between previous childhood emotional neglect and amygdala reactivity.

Authors:  Ryan Bogdan; Douglas E Williamson; Ahmad R Hariri
Journal:  Am J Psychiatry       Date:  2012-05       Impact factor: 18.112

2.  Gene-environment interactions in genome-wide association studies: a comparative study of tests applied to empirical studies of type 2 diabetes.

Authors:  Marilyn C Cornelis; Eric J Tchetgen Tchetgen; Liming Liang; Lu Qi; Nilanjan Chatterjee; Frank B Hu; Peter Kraft
Journal:  Am J Epidemiol       Date:  2011-12-22       Impact factor: 4.897

3.  Invited commentary: GE-Whiz! Ratcheting gene-environment studies up to the whole genome and the whole exposome.

Authors:  Duncan C Thomas; Juan Pablo Lewinger; Cassandra E Murcray; W James Gauderman
Journal:  Am J Epidemiol       Date:  2011-12-22       Impact factor: 4.897

4.  Genotype x Environment interaction in psychopathology: fact or artifact?

Authors:  Lindon J Eaves
Journal:  Twin Res Hum Genet       Date:  2006-02       Impact factor: 1.587

5.  SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap.

Authors:  Andrew D Johnson; Robert E Handsaker; Sara L Pulit; Marcia M Nizzari; Christopher J O'Donnell; Paul I W de Bakker
Journal:  Bioinformatics       Date:  2008-10-30       Impact factor: 6.937

6.  Editorial policy on candidate gene association and candidate gene-by-environment interaction studies of complex traits.

Authors:  John K Hewitt
Journal:  Behav Genet       Date:  2011-09-18       Impact factor: 2.805

7.  Convergence of genome-wide association and candidate gene studies for alcoholism.

Authors:  Emily Olfson; Laura Jean Bierut
Journal:  Alcohol Clin Exp Res       Date:  2012-09-14       Impact factor: 3.455

8.  Genome-wide meta-analyses identify multiple loci associated with smoking behavior.

Authors: 
Journal:  Nat Genet       Date:  2010-04-25       Impact factor: 38.330

9.  Distinguishing ordinal and disordinal interactions.

Authors:  Keith F Widaman; Jonathan L Helm; Laura Castro-Schilo; Michael Pluess; Michael C Stallings; Jay Belsky
Journal:  Psychol Methods       Date:  2012-09-17

10.  Multi-species data integration and gene ranking enrich significant results in an alcoholism genome-wide association study.

Authors:  Zhongming Zhao; An-Yuan Guo; Edwin J C G van den Oord; Fazil Aliev; Peilin Jia; Howard J Edenberg; Brien P Riley; Danielle M Dick; Jill C Bettinger; Andrew G Davies; Michael S Grotewiel; Marc A Schuckit; Arpana Agrawal; John Kramer; John I Nurnberger; Kenneth S Kendler; Bradley T Webb; Michael F Miles
Journal:  BMC Genomics       Date:  2012-12-17       Impact factor: 3.969

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  123 in total

Review 1.  Differential Susceptibility of the Developing Brain to Contextual Adversity and Stress.

Authors:  W Thomas Boyce
Journal:  Neuropsychopharmacology       Date:  2015-09-22       Impact factor: 7.853

Review 2.  Gene-Stress-Epigenetic Regulation of FKBP5: Clinical and Translational Implications.

Authors:  Anthony S Zannas; Tobias Wiechmann; Nils C Gassen; Elisabeth B Binder
Journal:  Neuropsychopharmacology       Date:  2015-08-13       Impact factor: 7.853

3.  Serotonin transporter polymorphism moderates the effects of caregiver intrusiveness on ADHD symptoms among institutionalized preschoolers.

Authors:  Joana Baptista; Jay Belsky; Ana Mesquita; Isabel Soares
Journal:  Eur Child Adolesc Psychiatry       Date:  2016-07-18       Impact factor: 4.785

4.  The Association of Neighborhood Gene-Environment Susceptibility with Cortisol and Blood Pressure in African-American Adults.

Authors:  Sandra M Coulon; Dawn K Wilson; M L Van Horn; Gregory A Hand; Stephen Kresovich
Journal:  Ann Behav Med       Date:  2016-02

5.  Gene-Environment Interplay: Where We Are, Where We Are Going.

Authors:  Jessica E Salvatore; Danielle M Dick
Journal:  J Marriage Fam       Date:  2015-04

6.  Critical Issues in the Inclusion of Genetic and Epigenetic Information in Prevention and Intervention Trials.

Authors:  Shawn J Latendresse; Rashelle Musci; Brion S Maher
Journal:  Prev Sci       Date:  2018-01

Review 7.  The paradox of intelligence: Heritability and malleability coexist in hidden gene-environment interplay.

Authors:  Bruno Sauce; Louis D Matzel
Journal:  Psychol Bull       Date:  2017-10-30       Impact factor: 17.737

8.  Genes, Environments, and Sex Differences in Alcohol Research.

Authors:  Jessica E Salvatore; Seung Bin Cho; Danielle M Dick
Journal:  J Stud Alcohol Drugs       Date:  2017-07       Impact factor: 2.582

9.  Alcohol Metabolizing Polygenic Risk for Alcohol Consumption in European American College Students.

Authors:  Nathaniel S Thomas; Amy Adkins; Fazil Aliev; Alexis C Edwards; Bradley T Webb; E Clare Tiarsmith; Kenneth S Kendler; Danielle M Dick; Karen G Chartier
Journal:  J Stud Alcohol Drugs       Date:  2018-07       Impact factor: 2.582

10.  FKBP5 genotype interacts with early life trauma to predict heavy drinking in college students.

Authors:  Richard Lieberman; Stephen Armeli; Denise M Scott; Henry R Kranzler; Howard Tennen; Jonathan Covault
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2016-05-19       Impact factor: 3.568

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